Merge pull request #570 from CliMA/js/lsm060

dep updates (Atmos v0.19.2, LSM v0.6.0)

Project.toml

@@ -29,7 +29,7 @@ ClimaAtmos = "0.19.1"
 ClimaComms = "0.5.6"
 ClimaCore = "0.11.8"
 ClimaCoreTempestRemap = "0.3"
-ClimaLSM = "0.5"
+ClimaLSM = "0.6"
 Dates = "1"
 DocStringExtensions = "0.8, 0.9"
 Insolation = "0.8"

experiments/AMIP/Manifest.toml

@@ -183,9 +183,9 @@ uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0"
 version = "1.0.8+1"
 
 [[deps.CEnum]]
-git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90"
+git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc"
 uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82"
-version = "0.4.2"
+version = "0.5.0"
 
 [[deps.CFTime]]
 deps = ["Dates", "Printf"]
@@ -252,12 +252,6 @@ git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2"
 uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a"
 version = "1.16.1+1"
 
-[[deps.CatIndices]]
-deps = ["CustomUnitRanges", "OffsetArrays"]
-git-tree-sha1 = "a0f80a09780eed9b1d106a1bf62041c2efc995bc"
-uuid = "aafaddc9-749c-510e-ac4f-586e18779b91"
-version = "0.2.2"
-
 [[deps.ChainRules]]
 deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"]
 git-tree-sha1 = "0aa0a3dd7b9bacbbadf1932ccbdfa938985c5561"
@@ -276,9 +270,9 @@ weakdeps = ["SparseArrays"]
 
 [[deps.ClimaAtmos]]
 deps = ["ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "CLIMAParameters", "ClimaComms", "ClimaCore", "ClimaTimeSteppers", "CloudMicrophysics", "Colors", "Dates", "Dierckx", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FastGaussQuadrature", "Insolation", "Interpolations", "IntervalSets", "Krylov", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "Pkg", "Printf", "RRTMGP", "Random", "RootSolvers", "SciMLBase", "StaticArrays", "Statistics", "StatsBase", "SurfaceFluxes", "Thermodynamics", "YAML"]
-git-tree-sha1 = "1115a9385729b0e33b1962a673e2729b1d817931"
+git-tree-sha1 = "03d3c492f00813e5a94de85a22ae2798c812c69d"
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
-version = "0.19.1"
+version = "0.19.2"
 
 [[deps.ClimaComms]]
 deps = ["CUDA", "MPI"]
@@ -316,9 +310,9 @@ version = "0.1.0"
 
 [[deps.ClimaLSM]]
 deps = ["ArtifactWrappers", "CFTime", "CSV", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "DataFrames", "Dates", "DocStringExtensions", "Flux", "HTTP", "IntervalSets", "JLD2", "LinearAlgebra", "NCDatasets", "SciMLBase", "StaticArrays", "StatsBase", "SurfaceFluxes", "Thermodynamics", "cuDNN"]
-git-tree-sha1 = "7f05edc3f421394f8ffb810ea4da5f4764c20628"
+git-tree-sha1 = "856e804712907aa32a944ef5c3a028171920fd94"
 uuid = "7884a58f-fab6-4fd0-82bb-ecfedb2d8430"
-version = "0.5.0"
+version = "0.6.0"
 
 [[deps.ClimaTimeSteppers]]
 deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
@@ -415,11 +409,6 @@ version = "0.1.2"
     [deps.CompositionsBase.weakdeps]
     InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112"
 
-[[deps.ComputationalResources]]
-git-tree-sha1 = "52cb3ec90e8a8bea0e62e275ba577ad0f74821f7"
-uuid = "ed09eef8-17a6-5b46-8889-db040fac31e3"
-version = "0.3.2"
-
 [[deps.ConcurrentUtilities]]
 deps = ["Serialization", "Sockets"]
 git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519"
@@ -465,11 +454,6 @@ git-tree-sha1 = "253193dfb0384646936c5ff3230b27a20d91261e"
 uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb"
 version = "0.2.4"
 
-[[deps.CustomUnitRanges]]
-git-tree-sha1 = "1a3f97f907e6dd8983b744d2642651bb162a3f7a"
-uuid = "dc8bdbbb-1ca9-579f-8c36-e416f6a65cce"
-version = "1.0.2"
-
 [[deps.DataAPI]]
 git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c"
 uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
@@ -657,17 +641,11 @@ git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e"
 uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5"
 version = "4.4.4+1"
 
-[[deps.FFTViews]]
-deps = ["CustomUnitRanges", "FFTW"]
-git-tree-sha1 = "cbdf14d1e8c7c8aacbe8b19862e0179fd08321c2"
-uuid = "4f61f5a4-77b1-5117-aa51-3ab5ef4ef0cd"
-version = "0.3.2"
-
 [[deps.FFTW]]
 deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"]
-git-tree-sha1 = "ec22cbbcd01cba8f41eecd7d44aac1f23ee985e3"
+git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d"
 uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
-version = "1.7.2"
+version = "1.8.0"
 
 [[deps.FFTW_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -935,33 +913,15 @@ version = "2.8.1+1"
 
 [[deps.IRTools]]
 deps = ["InteractiveUtils", "MacroTools", "Test"]
-git-tree-sha1 = "8aa91235360659ca7560db43a7d57541120aa31d"
+git-tree-sha1 = "5d8c5713f38f7bc029e26627b687710ba406d0dd"
 uuid = "7869d1d1-7146-5819-86e3-90919afe41df"
-version = "0.4.11"
+version = "0.4.12"
 
 [[deps.IfElse]]
 git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1"
 uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173"
 version = "0.1.1"
 
-[[deps.ImageBase]]
-deps = ["ImageCore", "Reexport"]
-git-tree-sha1 = "eb49b82c172811fd2c86759fa0553a2221feb909"
-uuid = "c817782e-172a-44cc-b673-b171935fbb9e"
-version = "0.1.7"
-
-[[deps.ImageCore]]
-deps = ["AbstractFFTs", "ColorVectorSpace", "Colors", "FixedPointNumbers", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "PrecompileTools", "Reexport"]
-git-tree-sha1 = "fc5d1d3443a124fde6e92d0260cd9e064eba69f8"
-uuid = "a09fc81d-aa75-5fe9-8630-4744c3626534"
-version = "0.10.1"
-
-[[deps.ImageFiltering]]
-deps = ["CatIndices", "ComputationalResources", "DataStructures", "FFTViews", "FFTW", "ImageBase", "ImageCore", "LinearAlgebra", "OffsetArrays", "PrecompileTools", "Reexport", "SparseArrays", "StaticArrays", "Statistics", "TiledIteration"]
-git-tree-sha1 = "432ae2b430a18c58eb7eca9ef8d0f2db90bc749c"
-uuid = "6a3955dd-da59-5b1f-98d4-e7296123deb5"
-version = "0.7.8"
-
 [[deps.InitialValues]]
 git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3"
 uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c"
@@ -1026,9 +986,9 @@ version = "1.0.0"
 
 [[deps.JLD2]]
 deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"]
-git-tree-sha1 = "315b508ec5df53936532097ffe6e5deacbf41861"
+git-tree-sha1 = "7c0008f0b7622c6c0ee5c65cbc667b69f8a65672"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.4.44"
+version = "0.4.45"
 
 [[deps.JLFzf]]
 deps = ["Pipe", "REPL", "Random", "fzf_jll"]
@@ -1360,11 +1320,6 @@ git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd"
 uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667"
 version = "0.1.8"
 
-[[deps.MappedArrays]]
-git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e"
-uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900"
-version = "0.4.2"
-
 [[deps.Markdown]]
 deps = ["Base64"]
 uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
@@ -1406,12 +1361,6 @@ version = "1.1.0"
 [[deps.Mmap]]
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 
-[[deps.MosaicViews]]
-deps = ["MappedArrays", "OffsetArrays", "PaddedViews", "StackViews"]
-git-tree-sha1 = "7b86a5d4d70a9f5cdf2dacb3cbe6d251d1a61dbe"
-uuid = "e94cdb99-869f-56ef-bcf0-1ae2bcbe0389"
-version = "0.3.4"
-
 [[deps.MozillaCACerts_jll]]
 uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
 version = "2023.1.10"
@@ -1574,12 +1523,6 @@ deps = ["Artifacts", "Libdl"]
 uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15"
 version = "10.42.0+1"
 
-[[deps.PaddedViews]]
-deps = ["OffsetArrays"]
-git-tree-sha1 = "0fac6313486baae819364c52b4f483450a9d793f"
-uuid = "5432bcbf-9aad-5242-b902-cca2824c8663"
-version = "0.5.12"
-
 [[deps.Parameters]]
 deps = ["OrderedCollections", "UnPack"]
 git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe"
@@ -1835,9 +1778,9 @@ version = "0.1.0"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"]
-git-tree-sha1 = "ad711463cb386572f33f6209464d8dca5a081247"
+git-tree-sha1 = "de41474ac529bf81598e064587421cc5ebc28fa0"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.19.0"
+version = "2.20.0"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -1945,12 +1888,6 @@ git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5"
 uuid = "171d559e-b47b-412a-8079-5efa626c420e"
 version = "0.1.15"
 
-[[deps.StackViews]]
-deps = ["OffsetArrays"]
-git-tree-sha1 = "46e589465204cd0c08b4bd97385e4fa79a0c770c"
-uuid = "cae243ae-269e-4f55-b966-ac2d0dc13c15"
-version = "0.1.1"
-
 [[deps.Static]]
 deps = ["IfElse"]
 git-tree-sha1 = "f295e0a1da4ca425659c57441bcb59abb035a4bc"
@@ -2021,9 +1958,9 @@ version = "0.3.4"
 
 [[deps.StructArrays]]
 deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"]
-git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213"
+git-tree-sha1 = "1b0b1205a56dc288b71b1961d48e351520702e24"
 uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
-version = "0.6.16"
+version = "0.6.17"
 
 [[deps.SuiteSparse]]
 deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
@@ -2118,12 +2055,6 @@ git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27"
 uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5"
 version = "0.5.2"
 
-[[deps.TiledIteration]]
-deps = ["OffsetArrays", "StaticArrayInterface"]
-git-tree-sha1 = "1176cc31e867217b06928e2f140c90bd1bc88283"
-uuid = "06e1c1a7-607b-532d-9fad-de7d9aa2abac"
-version = "0.5.0"
-
 [[deps.TimerOutputs]]
 deps = ["ExprTools", "Printf"]
 git-tree-sha1 = "f548a9e9c490030e545f72074a41edfd0e5bcdd7"
@@ -2456,9 +2387,9 @@ version = "1.5.5+0"
 
 [[deps.Zygote]]
 deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"]
-git-tree-sha1 = "30c1b8bfc2b3c7c5d8bba7cd32e8b6d5f968e7c3"
+git-tree-sha1 = "4ddb4470e47b0094c93055a3bcae799165cc68f1"
 uuid = "e88e6eb3-aa80-5325-afca-941959d7151f"
-version = "0.6.68"
+version = "0.6.69"
 
     [deps.Zygote.extensions]
     ZygoteColorsExt = "Colors"
@@ -2478,9 +2409,9 @@ version = "0.2.5"
 
 [[deps.cuDNN]]
 deps = ["CEnum", "CUDA", "CUDA_Runtime_Discovery", "CUDNN_jll"]
-git-tree-sha1 = "94f6b231d21b8a10f5c3ccc4b4009017ca922847"
+git-tree-sha1 = "d433ec29756895512190cac9c96666d879f07b92"
 uuid = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd"
-version = "1.2.2"
+version = "1.3.0"
 
 [[deps.eudev_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"]

experiments/ClimaCore/Manifest.toml

@@ -582,9 +582,9 @@ version = "4.4.4+1"
 
 [[deps.FFTW]]
 deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"]
-git-tree-sha1 = "ec22cbbcd01cba8f41eecd7d44aac1f23ee985e3"
+git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d"
 uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
-version = "1.7.2"
+version = "1.8.0"
 
 [[deps.FFTW_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -895,9 +895,9 @@ version = "1.0.0"
 
 [[deps.JLD2]]
 deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"]
-git-tree-sha1 = "315b508ec5df53936532097ffe6e5deacbf41861"
+git-tree-sha1 = "7c0008f0b7622c6c0ee5c65cbc667b69f8a65672"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.4.44"
+version = "0.4.45"
 
 [[deps.JLFzf]]
 deps = ["Pipe", "REPL", "Random", "fzf_jll"]