Skip to content

Commit

Permalink
Fix paths in kraken section
Browse files Browse the repository at this point in the history
  • Loading branch information
evelyngreeves committed Jun 20, 2024
1 parent 64f6524 commit c07b081
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions docs/lesson06-taxonomic-annotations/01-taxonomic.qmd
Original file line number Diff line number Diff line change
Expand Up @@ -154,7 +154,7 @@ Loading database information... done.
This command generates two outputs, a .kraken and a .report file. Let's look at the top of these files with the following command:

``` {.bash filename="Code"}
head taxonomy/ERR4998593.kraken
head results/taxonomy/ERR4998593.kraken
```

``` {.default filename="Output"}
Expand All @@ -173,7 +173,7 @@ U ERR4998593.57807180 0 151 A:5 0:112
This gives us information about every read in the raw reads. As we can see, the kraken file is not very readable. So let's look at the report file instead:

``` {.bash filename="Code"}
less taxonomy/ERR4998593.report
less results/taxonomy/ERR4998593.report
```

``` {.default filename="Output"}
Expand Down

0 comments on commit c07b081

Please sign in to comment.