Cardiac geometries is a software package built on top of cariac-geometries-core that adds support for creating idealized cardiac geometries for dolfinx.
There are two ways you can use cardiac-geomtries, either using the command line interface, e.g
geox lv-ellipsoid --create-fibers lv-mesh --fiber-space P_2
or using the python API e.g
geo = cardiac_geometries.mesh.lv_ellipsoid(outdir="lv-mesh", create_fibers=True, fiber_space="P_2")To install the package you can use pip
python3 -m pip install cardiac-geometriesx
however, this assumes that you already have dolfinx pre-installed. You can also use the provided docker image e.g
docker pull ghcr.io/computationalphysiology/cardiac-geometriesx:latest
To start a new container interactive you can do
docker run --name geox -v $PWD:/home/shared -w /home/shared -it ghcr.io/computationalphysiology/cardiac-geometriesx:latest
or if you just want to create a mesh and exit you can run the command line interface directly e.g
docker run --rm -v $PWD:/home/shared -w /home/shared -it ghcr.io/computationalphysiology/cardiac-geometriesx:latest geox lv-ellipsoid --create-fibers lv-mesh --fiber-space P_2
Henrik Finsberg (henriknf@simula.no)
MIT