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LegrandNico committed Dec 12, 2023
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10 changes: 5 additions & 5 deletions notebooks/0-Creating_networks.html
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Expand Up @@ -537,7 +537,7 @@ <h3>Visualizing probabilistic networks<a class="headerlink" href="#visualizing-p
</div>
<div class="cell_output docutils container">
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>WARNING: All log messages before absl::InitializeLog() is called are written to STDERR
I0000 00:00:1702371054.466878 2381 tfrt_cpu_pjrt_client.cc:349] TfrtCpuClient created.
I0000 00:00:1702372054.680589 2436 tfrt_cpu_pjrt_client.cc:349] TfrtCpuClient created.
No GPU/TPU found, falling back to CPU. (Set TF_CPP_MIN_LOG_LEVEL=0 and rerun for more info.)
</pre></div>
</div>
Expand Down Expand Up @@ -707,7 +707,7 @@ <h5>Continuous value coupling<a class="headerlink" href="#continuous-value-coupl
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Adding 1000 new observations.
</pre></div>
</div>
<img alt="../_images/fae290094c80891ce2bf427b85d679fe490cc607ee7d72c47196fb029166e00d.png" src="../_images/fae290094c80891ce2bf427b85d679fe490cc607ee7d72c47196fb029166e00d.png" />
<img alt="../_images/3802c9fcb157508be31068c3c491008339ef7239229926efcea583875ca5374f.png" src="../_images/3802c9fcb157508be31068c3c491008339ef7239229926efcea583875ca5374f.png" />
</div>
</div>
<div class="admonition note">
Expand Down Expand Up @@ -867,7 +867,7 @@ <h5>Coupling with binary nodes<a class="headerlink" href="#coupling-with-binary-
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Adding 1000 new observations.
</pre></div>
</div>
<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;pyhgf.model.HGF at 0x7ff8186a5390&gt;
<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;pyhgf.model.HGF at 0x7f3b88d81ab0&gt;
</pre></div>
</div>
</div>
Expand Down Expand Up @@ -994,10 +994,10 @@ <h1>System configuration<a class="headerlink" href="#system-configuration" title
jax : 0.4.16
jaxlib: 0.4.16

seaborn : 0.13.0
numpy : 1.22.0
sys : 3.10.13 (main, Aug 28 2023, 08:28:42) [GCC 11.4.0]
matplotlib: 3.8.2
sys : 3.10.13 (main, Aug 28 2023, 08:28:42) [GCC 11.4.0]
seaborn : 0.13.0

Watermark: 2.4.3
</pre></div>
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26 changes: 13 additions & 13 deletions notebooks/1.1-Binary_HGF.html
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Expand Up @@ -539,7 +539,7 @@ <h4>Create the model<a class="headerlink" href="#create-the-model" title="Link t
</div>
<div class="cell_output docutils container">
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>WARNING: All log messages before absl::InitializeLog() is called are written to STDERR
I0000 00:00:1702371077.119374 2600 tfrt_cpu_pjrt_client.cc:349] TfrtCpuClient created.
I0000 00:00:1702372077.922783 2667 tfrt_cpu_pjrt_client.cc:349] TfrtCpuClient created.
No GPU/TPU found, falling back to CPU. (Set TF_CPP_MIN_LOG_LEVEL=0 and rerun for more info.)
</pre></div>
</div>
Expand Down Expand Up @@ -816,7 +816,7 @@ <h4>Sampling<a class="headerlink" href="#sampling" title="Link to this heading">
</div>
</div>
<div class="cell_output docutils container">
<img alt="../_images/7be2d0afe59ca2c998555a253a597cba3132e47c01feeee87bb4a7dac66cd363.png" src="../_images/7be2d0afe59ca2c998555a253a597cba3132e47c01feeee87bb4a7dac66cd363.png" />
<img alt="../_images/749af733098704bc945fb1d97f3c5f8a42dfe280b04272e947d66d1afcb6e420.png" src="../_images/749af733098704bc945fb1d97f3c5f8a42dfe280b04272e947d66d1afcb6e420.png" />
</div>
</div>
</section>
Expand Down Expand Up @@ -865,7 +865,7 @@ <h3>Using the learned parameters<a class="headerlink" href="#using-the-learned-p
</div>
</div>
<div class="cell_output docutils container">
<img alt="../_images/bb1ee501e9d2ba34e10b0640298db1a12c3ca8a7acef64f6e784a9bfe1cbfa07.png" src="../_images/bb1ee501e9d2ba34e10b0640298db1a12c3ca8a7acef64f6e784a9bfe1cbfa07.png" />
<img alt="../_images/56e2554f73cd3e3bd91ba99ceb96b90d0b3b096011faccc04525b6b73cc94e1d.png" src="../_images/56e2554f73cd3e3bd91ba99ceb96b90d0b3b096011faccc04525b6b73cc94e1d.png" />
</div>
</div>
<div class="cell docutils container">
Expand All @@ -875,7 +875,7 @@ <h3>Using the learned parameters<a class="headerlink" href="#using-the-learned-p
</div>
</div>
<div class="cell_output docutils container">
<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Array(202.53082, dtype=float32)
<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Array(202.5297, dtype=float32)
</pre></div>
</div>
</div>
Expand Down Expand Up @@ -927,7 +927,7 @@ <h4>Visualizing the model<a class="headerlink" href="#id8" title="Link to this h
</div>
</div>
<div class="cell_output docutils container">
<img alt="../_images/69539e2739458d7218e514133841304a4e4b0eb711fc8054497123f2e226d095.svg" src="../_images/69539e2739458d7218e514133841304a4e4b0eb711fc8054497123f2e226d095.svg" /></div>
<img alt="../_images/e3093df40c606a365fce51328bb90c832e9b204e89fed0d0688e3e2fdb1677dd.svg" src="../_images/e3093df40c606a365fce51328bb90c832e9b204e89fed0d0688e3e2fdb1677dd.svg" /></div>
</div>
</section>
<section id="id9">
Expand Down Expand Up @@ -971,9 +971,9 @@ <h4>Sampling<a class="headerlink" href="#id9" title="Link to this heading">#</a>
</div><div class="output text_html">
<div>
<progress value='4000' class='' max='4000' style='width:300px; height:20px; vertical-align: middle;'></progress>
100.00% [4000/4000 00:08&lt;00:00 Sampling 2 chains, 1 divergences]
100.00% [4000/4000 00:08&lt;00:00 Sampling 2 chains, 0 divergences]
</div>
</div><div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Sampling 2 chains for 1_000 tune and 1_000 draw iterations (2_000 + 2_000 draws total) took 8 seconds.
</div><div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Sampling 2 chains for 1_000 tune and 1_000 draw iterations (2_000 + 2_000 draws total) took 9 seconds.
</pre></div>
</div>
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>We recommend running at least 4 chains for robust computation of convergence diagnostics
Expand All @@ -989,7 +989,7 @@ <h4>Sampling<a class="headerlink" href="#id9" title="Link to this heading">#</a>
</div>
</div>
<div class="cell_output docutils container">
<img alt="../_images/7247c09f2e536514a9f4cca8e408d45cadbdb7a5550538ee6d94c624b6ac576f.png" src="../_images/7247c09f2e536514a9f4cca8e408d45cadbdb7a5550538ee6d94c624b6ac576f.png" />
<img alt="../_images/203680778166728b3f6e1753de7dc9e3244f813fcb8276bb07943bca5691d166.png" src="../_images/203680778166728b3f6e1753de7dc9e3244f813fcb8276bb07943bca5691d166.png" />
</div>
</div>
</section>
Expand Down Expand Up @@ -1039,7 +1039,7 @@ <h3>Using the learned parameters<a class="headerlink" href="#id10" title="Link t
</div>
</div>
<div class="cell_output docutils container">
<img alt="../_images/addf2d33d91d92db11cc7d4de776ca962804fb42b09820afed606eb0efc9e6df.png" src="../_images/addf2d33d91d92db11cc7d4de776ca962804fb42b09820afed606eb0efc9e6df.png" />
<img alt="../_images/1e8bed49c7e2152e429978f89facf943ba05b41f5a6ad77d332e0a1cd85a65a1.png" src="../_images/1e8bed49c7e2152e429978f89facf943ba05b41f5a6ad77d332e0a1cd85a65a1.png" />
</div>
</div>
<div class="cell docutils container">
Expand All @@ -1049,7 +1049,7 @@ <h3>Using the learned parameters<a class="headerlink" href="#id10" title="Link t
</div>
</div>
<div class="cell_output docutils container">
<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Array(203.0094, dtype=float32)
<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Array(203.0253, dtype=float32)
</pre></div>
</div>
</div>
Expand Down Expand Up @@ -1077,11 +1077,11 @@ <h1>System configuration<a class="headerlink" href="#system-configuration" title
jax : 0.4.16
jaxlib: 0.4.16

arviz : 0.16.1
matplotlib: 3.8.2
pymc : 5.10.1
sys : 3.10.13 (main, Aug 28 2023, 08:28:42) [GCC 11.4.0]
pymc : 5.10.1
jax : 0.4.16
matplotlib: 3.8.2
arviz : 0.16.1
seaborn : 0.13.0

Watermark: 2.4.3
Expand Down
30 changes: 15 additions & 15 deletions notebooks/1.2-Categorical_HGF.html
Original file line number Diff line number Diff line change
Expand Up @@ -534,7 +534,7 @@ <h2>Simulating a dataset<a class="headerlink" href="#simulating-a-dataset" title
</div>
</div>
<div class="cell_output docutils container">
<img alt="../_images/5855cdd14837c67afb8ca28fa689a016c044589c1a7aae3a5ef3e2623ba2492d.png" src="../_images/5855cdd14837c67afb8ca28fa689a016c044589c1a7aae3a5ef3e2623ba2492d.png" />
<img alt="../_images/1547fc8985144ee3fdea0b5ad284530b0e4e776ff3d09cd70cb738f973afe4eb.png" src="../_images/1547fc8985144ee3fdea0b5ad284530b0e4e776ff3d09cd70cb738f973afe4eb.png" />
</div>
</div>
<div class="admonition note">
Expand Down Expand Up @@ -575,7 +575,7 @@ <h3>Creating the probabilistic network<a class="headerlink" href="#creating-the-
</div>
<div class="cell_output docutils container">
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>WARNING: All log messages before absl::InitializeLog() is called are written to STDERR
I0000 00:00:1702371126.647286 2989 tfrt_cpu_pjrt_client.cc:349] TfrtCpuClient created.
I0000 00:00:1702372129.817608 3049 tfrt_cpu_pjrt_client.cc:349] TfrtCpuClient created.
No GPU/TPU found, falling back to CPU. (Set TF_CPP_MIN_LOG_LEVEL=0 and rerun for more info.)
</pre></div>
</div>
Expand Down Expand Up @@ -658,7 +658,7 @@ <h3>Fitting the model forwards<a class="headerlink" href="#fitting-the-model-for
</div>
</div>
<div class="cell_output docutils container">
<img alt="../_images/9892bd75ab3b858d1a9d1a83e4af772fa3a99e20a4e589d845720a0b40166c21.png" src="../_images/9892bd75ab3b858d1a9d1a83e4af772fa3a99e20a4e589d845720a0b40166c21.png" />
<img alt="../_images/e0f67eded59e1e26f8f6d1258b13925b350e12a62e52c7b04ac6b0e035591928.png" src="../_images/e0f67eded59e1e26f8f6d1258b13925b350e12a62e52c7b04ac6b0e035591928.png" />
</div>
</div>
<div class="cell docutils container">
Expand All @@ -672,15 +672,15 @@ <h3>Fitting the model forwards<a class="headerlink" href="#fitting-the-model-for
1. ],
[2.0445216, 2.0445216, 2.0445216, ..., 2.5556629, 2.0445216,
2.0445216],
[2.1143956, 2.1143956, 2.1143956, ..., 2.7494168, 2.1143956,
[2.1143956, 2.1143956, 2.1143956, ..., 2.222889 , 2.6317995,
2.1143956],
...,
[4.411863 , 6.6914744, 3.7166734, ..., 2.4109159, 1.7010833,
1.5658604],
[4.37676 , 7.2455597, 3.6916356, ..., 2.4218128, 1.6985779,
1.5642372],
[4.3405523, 7.602443 , 3.6663218, ..., 2.431178 , 1.6961371,
1.5626398]], dtype=float32)
[5.485437 , 6.3858624, 4.574685 , ..., 2.1575747, 2.3001714,
1.4340663],
[5.080553 , 6.2617826, 5.09962 , ..., 2.1646917, 2.2970295,
1.4331563],
[5.0526347, 6.803068 , 4.649716 , ..., 2.1709945, 2.2936542,
1.4323133]], dtype=float32)
</pre></div>
</div>
</div>
Expand Down Expand Up @@ -836,14 +836,14 @@ <h1>System configuration<a class="headerlink" href="#system-configuration" title
jax : 0.4.16
jaxlib: 0.4.16

pytensor : 2.18.3
jax : 0.4.16
arviz : 0.16.1
seaborn : 0.13.0
matplotlib: 3.8.2
pymc : 5.10.1
sys : 3.10.13 (main, Aug 28 2023, 08:28:42) [GCC 11.4.0]
arviz : 0.16.1
numpy : 1.22.0
seaborn : 0.13.0
sys : 3.10.13 (main, Aug 28 2023, 08:28:42) [GCC 11.4.0]
jax : 0.4.16
pytensor : 2.18.3

Watermark: 2.4.3
</pre></div>
Expand Down
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