update notebook for the method paper (#241)

* gitignore * small tweaks in plot functions * paper notebook
ComputationalPsychiatry · Oct 13, 2024 · 3d995fc · 3d995fc
1 parent 838f16d
commit 3d995fc
Show file tree

Hide file tree

Showing 3 changed files with 257 additions and 103 deletions.
diff --git a/.gitignore b/.gitignore
@@ -14,4 +14,5 @@ build
 coverage.xm
 .mypy_cache
 .pytest_cache
-dist/*
+dist/*
+src/hgf/target*
diff --git a/docs/paper.ipynb b/docs/paper.ipynb
diff --git a/src/pyhgf/plots.py b/src/pyhgf/plots.py
@@ -462,7 +462,7 @@ def plot_nodes(
                     s=3,
                     label="Input",
                     color="#2a2a2a",
-                    zorder=10,
+                    zorder=2,
                 )
                 # plotting standard deviation
                 if ci is True:
@@ -479,7 +479,7 @@ def plot_nodes(
                     y=trajectories_df[f"x_{node_idx}_mean"],
                     label="Input",
                     color="#2a2a2a",
-                    zorder=10,
+                    zorder=2,
                     alpha=0.4,
                 )
 
@@ -570,7 +570,7 @@ def plot_nodes(
                     s=3,
                     label="Posterior",
                     color="#2a2a2a",
-                    zorder=10,
+                    zorder=2,
                     alpha=0.5,
                 )
                 axs[i].legend(loc="lower left")