Releases: CornellLabofOrnithology/auk
Releases · CornellLabofOrnithology/auk
auk 0.4.2
auk 0.3.3
auk 0.3.3
- Dates can now wrap in
auk_date()
, e.g. usedate = c("*-12-01", "*-01-31")
for records from December or January - Fixed bug preventing dropping of
age/sex
column - Allow for a wider variety of protocols in
auk_protocol()
- Addresing some deprecated functions from rlang
- Fixed bug causing
auk_set_awk_path()
to fail
auk 0.3.0
- Updated to 2018 taxonomy; new function
get_ebird_taxonomy()
to get taxonomy via the eBird API - Better handling of taxonomy versions, many functions now take a
taxonomy_version
argument and use the eBird API to get the taxonomy auk_getpath()
renamedauk_get_awk_path()
, and addedauk_set_awk_path()
- Added
auk_set_ebd_path()
andauk_get_ebd_path()
to set and get the
EBD_PATH
environment variable. Now users only need to set this once and just
refer to the file name, rather than specifying the full path every time. - Functions to prepare data for occupancy modeling:
filter_repeat_visits()
andformat_unmarked_occu()
- New
auk_bcr()
function to extract data from BCRs - Added
bcr_codes
data frame to look up BCR names and codes - "Area" protocol added to
auk_protocol()
filter. auk_extent()
renamedauk_bbox()
;auk_extent()
deprecated and redirects toauk_bbox()
auk_zerofill()
now checks for complete checklists and gives option to not rollupauk_rollup()
now gives the option of keeping higher taxa viadrop_higher
argumentauk_clean()
deprecated- Fixed package load error when
EBD_PATH
is invalid - Fixed bug when reading files with a blank column using
readr
auk 0.2.1
auk 0.2.0
- New function,
auk_split()
, splits EBD up into multiple files by species - New object,
auk_sampling
, and associated methods for working with the sampling data only - New function,
auk_select()
, for selecting a subset of columns auk_date()
now allows filtering date ranges across years using wildcards, e.g.date = c("*-05-01", "*-06-30")
for observations from May and June of any year- New function,
auk_state()
for filtering by state - Now using AWK arrays to speed up country and species filtering; ~20% speed up when filtering on many species/countries
- Allow selection of a subset of columns when filtering
- Remove free text columns in
auk_clean()
to decrease file size - Updated to work with Feb 2018 version of EBD
- Fixed broken dependency on
countrycode
package
auk 0.1.0
auk 0.1.0
- eBird taxonomy update to August 2017 version, users should download the most recent EBD to ensure the taxonomy is in sync with the new package
- Manually set AWK path with environment variable
AWK_PATH
in.Renviron
file auk_distance
,auk_breeding
,auk_protocol
, andauk_project
filters added- Users can now specify a subset of columns to return when calling auk_filter using the keep and drop arguments
- Many changes suggested by rOpenSci package peer review process, see ropensci/software-review#136 for details
- New vignette added to aid those wanting to contribute to package development