Conda activate fix and development environment #9
Workflow file for this run
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| name: CI | |
| on: | |
| pull_request: | |
| branches: | |
| - develop | |
| jobs: | |
| test-full: | |
| name: Full Test Suite | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: [3.11] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Linux dependencies | |
| if: runner.os == 'Linux' | |
| run: sudo apt-get install libopenblas-dev | |
| - name: Install macOS Dependencies | |
| shell: bash -l {0} | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew tap sfarrens/sf | |
| brew install bigmac libomp | |
| - name: Set up conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| auto-activate-base: true | |
| miniforge-version: latest | |
| - name: Install package | |
| shell: bash -l {0} | |
| run: | | |
| ./install_shapepipe --env-dev --develop | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: | | |
| conda activate shapepipe-dev | |
| pytest | |
| shapepipe_run -c example/config.ini |