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55 Open 163 Closed
55 Open 163 Closed
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Issues list

reg-gen for non-model organism
#279 opened Jul 19, 2024 by francicco
unable to generate the index.html file When using TDF
#277 opened Jul 17, 2024 by zisweet
Update to JASPAR 2022
#274 opened Jul 11, 2024 by kelly-sovacool
configparser.NoOptionError: No option 'gene_regions' in section: 'hg38'
#273 opened Jul 2, 2024 by zisweet
2
warnings/errors in rgt-THOR
#271 opened May 15, 2024 by sunta3iouxos
rgt-THOR multiple warnings for wigToBigWig
#270 opened May 15, 2024 by sunta3iouxos
failed installation on Mac mini with Apple M2 Chip
#269 opened Mar 28, 2024 by JianxunHan
1
Deprecation warnings, non-compatibility with python 3.12, libpng12.so.0
#268 opened Feb 8, 2024 by StrohD
Error in rgt-hint differential for my own data
#267 opened Feb 8, 2024 by junichitaniguchi
Fold-change values in THOR differential peaks and post-processed bigwigs
#265 opened Jan 24, 2024 by dmitrymyl
Result file description
#264 opened Dec 4, 2023 by ilead-cong
aarch64 support
#262 opened Sep 14, 2023 by EricDeveaud
Transcription factor scatter plot
#261 opened Aug 28, 2023 by gf5634
2
ResourceWarning: unclosed file (Enable tracemalloc to get the object allocation traceback)
#259 opened Aug 2, 2023 by sunta3iouxos
Number of success in mpbs.bed and fulltest_statistics.txt files did not match
#256 opened Jul 3, 2023 by hhvu0102
Motif enrichment scores
#254 opened Jun 30, 2023 by amwa
1
Question regarding how Lineplots values are calculated, related to #116
#252 opened Jun 8, 2023 by AlexBlais74
1
TDF issue
#248 opened Apr 11, 2023 by iorilondon
2
RGT_Differential_Error
#246 opened Mar 23, 2023 by rm1238
5
Questions about motif matching
#245 opened Mar 15, 2023 by hhvu0102
Generating mtf file
#244 opened Jan 30, 2023 by czfoo
rgt-THOR IndexError: list index out of range
#239 opened Jan 13, 2023 by SophieEhres
THOR "IndexError: cannot do a non-empty take from an empty axes" issue
#234 opened Nov 19, 2022 by juylmin
RGT-HINT genome files are incompatible with nf-core ATAC-seq pipeline.
#232 opened Oct 23, 2022 by hyjforesight
1
install failure: bedGraphToBigWig "utf-8 codec"
#204 opened May 26, 2022 by darked89
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