Merge pull request #2 from Cytomine-ULiege/update-lib

Update Bioformats to v6.4.0
Cytomine-ULiege · Apr 3, 2020 · 7ec0e65 · 7ec0e65
2 parents f67221d + 4dbf2a0
commit 7ec0e65
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/.travis.yml b/.travis.yml
@@ -1,5 +1,7 @@
 sudo: required
 
+dist: trusty
+
 services:
   - docker
 

diff --git a/lib/bioformats_package.jar b/lib/bioformats_package.jar
diff --git a/src/main/groovy/be/cytomine/bioformats/worker/Convertor.groovy b/src/main/groovy/be/cytomine/bioformats/worker/Convertor.groovy
@@ -82,14 +82,13 @@ class Convertor extends Worker {
         def dimensionPattern = (group && imageCount > 1) ? "_Z%z_C%c_T%t" : ""
 
         File target = new File(targetDirectory, "${basePath}${dimensionPattern}.tiff")
-
         ArrayList<String> args = []
         args << file.absolutePath
         args << "-series"
         args << "$serieNumber".toString()
         args << "-compression"
         args << "LZW"
-        args << "-bigtiff"
+        //args << "-bigtiff"
         args << "-tilex"
         args << "256"
         args << "-tiley"
@@ -99,7 +98,6 @@ class Convertor extends Worker {
 
         ImageConverter ic = new ImageConverter()
         def success = ic.testConvert(new ImageWriter(), (String[]) args.toArray())
-
         if (!success) {
             throw new FormatException("Error during conversion by BioFormats")
         }