added comments to functions in cox.py file (#76) #10
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name: "QC 🛠️" | |
on: [push] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
os: ["ubuntu-latest"] | |
python-version: ["3.10"] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Setup Miniconda | |
uses: conda-incubator/setup-miniconda@v3 | |
with: | |
auto-update-conda: true | |
miniconda-version: "latest" | |
python-version: ${{ matrix.python-version }} | |
activate-environment: torchsurv | |
- name: Get Date | |
id: get-date | |
run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT | |
shell: bash | |
- name: Cache Conda env | |
uses: actions/cache@v3 | |
with: | |
path: ${{ env.CONDA }}/envs | |
key: | |
conda-${{ runner.os }}--${{ runner.arch }}--${{ steps.get-date.outputs.today }}-${{ hashFiles('dev/environment.yml') }}-${{ env.CACHE_NUMBER }} | |
env: | |
# Increase this value to reset cache if environment.yml has not changed | |
CACHE_NUMBER: 1 | |
- name: Update conda environment | |
run: | |
conda env update -n torchsurv -f dev/environment.yml | |
if: steps.cache.outputs.cache-hit != 'true' | |
- name: Code QC | |
shell: bash -l {0} | |
run: | | |
conda activate torchsurv | |
./dev/codeqc.sh check | |
- name: Tests | |
shell: bash -l {0} | |
run: | | |
conda activate torchsurv | |
./dev/run-doctests.sh | |
./dev/run-unittests.sh | |
- name: Test-build docs | |
shell: bash -l {0} | |
run: | | |
conda activate torchsurv | |
./dev/build-docs.sh | |
tar czvf docs.tar.gz -C docs/_build/html . | |
- name: 'Upload Docs Tarball' | |
uses: actions/upload-artifact@v4 | |
with: | |
name: docs.tar.gz | |
path: docs.tar.gz | |
retention-days: 5 |