Closed unitigs

Generates the closed unitigs starting from a BCALM generated FASTA file representing a de Bruijn graph of sequencing data.

What are closed unitigs?

Usage

closed-unitigs INPUT

Workflow example

1. Generate the de Bruijn graph with BCALM:

bcalm -in list.fa -kmer-size 16 -max-memory 1000 -all-abundance-counts 

2. Generate the closed unitigs:

closed-unitigs list.unitigs.fa

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