Compute extension_radial posterior directly and use this for parameter estimates, as opposed to using extension+ellipticity summary statistics #69
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| # For more information on conda actions see: https://autobencoder.com/2020-08-24-conda-actions/ | |
| # Starter workflow for conda: https://github.com/actions/starter-workflows/blob/main/ci/python-package-conda.yml | |
| name: build | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: '0 0 1 * *' | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 3 | |
| matrix: | |
| python-version: [2.7, 3.8] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Setup conda | |
| run: | | |
| # Add $CONDA/bin to built-in path | |
| echo $CONDA/bin >> $GITHUB_PATH | |
| conda update -q conda | |
| conda info | |
| - name: Create conda environment | |
| run: | | |
| conda create -y -q -n env python=${{ matrix.python-version }} numpy scipy matplotlib astropy healpy pyyaml emcee fitsio corner -c conda-forge -c kadrlica | |
| # Add UGALIDIR to environment | |
| conda env config vars set UGALIDIR=$HOME/.ugali -n env | |
| - name: Install package | |
| run: | | |
| source activate env | |
| conda env config vars list | |
| python setup.py -q install --isochrones --catalogs --tests | |
| - name: Lint with flake8 | |
| if: ${{ true }} | |
| run: | | |
| source activate env | |
| conda install -q flake8 -c conda-forge | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| - name: Test with nose | |
| run: | | |
| source activate env | |
| conda install -q nose -c conda-forge | |
| export MPLBACKEND=Agg | |
| # Exclude notebook tests | |
| nosetests -v -I test_notebook.py; | |
| - name: Test notebooks | |
| if: ${{ matrix.python-version == '2.7' }} | |
| run: | | |
| source activate env | |
| conda install -q jupyter nbconvert -c conda-forge | |
| # Run notebook tests | |
| nosetests -v tests/test_notebook.py |