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@DeepMicroscopy

DeepMicroscopy - Generating Deep Insights from Deep Learning in Microscopy

This is our central home for all our digital pathology projects, focusing on deep learning.

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  1. SlideRunner SlideRunner Public

    SlideRunner is a tool for massive cell annotations in whole slide images

    Python 75 10

  2. Exact Exact Public

    An open source online platform for collaborative image labeling of almost everything

    JavaScript 55 16

  3. MITOS_WSI_CCMCT MITOS_WSI_CCMCT Public

    Large-Scale Canine Cutaneous Mast Cell Tumor Dataset for Mitotic Figure Assessment on Whole Slide Images

    Jupyter Notebook 27 10

  4. MITOS_WSI_CMC MITOS_WSI_CMC Public

    Large-Scale Canine Mammary Carcinoma Dataset for Mitotic Figure Assessment on Whole Slide Images

    Jupyter Notebook 19 9

  5. MIDOG MIDOG Public

    MItosis DOmain Generalization Challenge 2021/2022

    Python 14 5

  6. TUPAC16_AlternativeLabels TUPAC16_AlternativeLabels Public

    Alternative training set for the TUPAC16 auxiliary mitotic figure data set

    Jupyter Notebook 11 4

Repositories

Showing 10 of 33 repositories
  • Exact Public

    An open source online platform for collaborative image labeling of almost everything

    DeepMicroscopy/Exact’s past year of commit activity
    JavaScript 55 MIT 16 11 0 Updated Aug 2, 2024
  • EXACT-QueueRunner Public

    Repository for EXACT QueueRunner, a service that executes processing for jobs available on EXACT.

    DeepMicroscopy/EXACT-QueueRunner’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Aug 2, 2024
  • FELIX Public

    Felinae Evaluation with Layperson and ML Interaction EXperience Dataset (FELIX)

    DeepMicroscopy/FELIX’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 25, 2024
  • Prototype-sampling Public
    DeepMicroscopy/Prototype-sampling’s past year of commit activity
    Python 0 0 0 0 Updated Jul 10, 2024
  • QuiltCleaner Public

    Automatic cleaning of the QUILT-1M pathology dataset

    DeepMicroscopy/QuiltCleaner’s past year of commit activity
    Jupyter Notebook 3 MIT 0 0 0 Updated Jul 5, 2024
  • CD3-Detection Public
    DeepMicroscopy/CD3-Detection’s past year of commit activity
    Python 0 0 0 0 Updated Jun 5, 2024
  • MIDOGpp Public

    A large, multi-domain mitotic Figure Dataset

    DeepMicroscopy/MIDOGpp’s past year of commit activity
    Python 10 MIT 6 0 0 Updated May 22, 2024
  • Histopathology-Datasets Public Forked from maduc7/Histopathology-Datasets

    Ressources of histopathology datasets

    DeepMicroscopy/Histopathology-Datasets’s past year of commit activity
    0 34 0 0 Updated Apr 29, 2024
  • MITOS_WSI_CCMCT Public

    Large-Scale Canine Cutaneous Mast Cell Tumor Dataset for Mitotic Figure Assessment on Whole Slide Images

    DeepMicroscopy/MITOS_WSI_CCMCT’s past year of commit activity
    Jupyter Notebook 27 10 0 0 Updated Apr 29, 2024
  • nnUNet-for-pathology Public Forked from DIAGNijmegen/nnUNet-for-pathology

    Adapted nnUNet framework with additional features to suit the requirements for pathology applications

    DeepMicroscopy/nnUNet-for-pathology’s past year of commit activity
    Python 0 Apache-2.0 1,696 0 0 Updated Apr 8, 2024
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