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Pull requests: DerrickWood/kraken2

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Pull requests list

fix: exclude ambiguous bases from confidence scoring calculation
#879 opened Sep 11, 2024 by mcolpus Loading…
1
implement @togop's fix for Rsync error: issue 518
#850 opened Jul 4, 2024 by xonq Loading…
Interleaved Fastq input
#843 opened Jun 21, 2024 by WEClarke Loading…
add more deps to makefile
#783 opened Dec 16, 2023 by jchorl Loading…
Fix issue with Silva having domain and superkingdom taxonomic ranks both converted to superkingdom (D) in Kraken
#745 opened Jul 31, 2023 by Thomas-Bcp Loading…
Check existence output folder prior to running kraken2
#718 opened May 9, 2023 by TheOafidian Loading…
1
fixed library & taxonomy download functions and added multiprocessing to speed up downloads
#698 opened Mar 12, 2023 by eladc Loading…
Updated kraken2-build to allow symlinks in the library directory
#603 opened Jun 20, 2022 by oracle5th Loading…
Add batch-size option
#586 opened May 11, 2022 by nrhorner Loading…
Use HTTPS instead for plasmids, update path
#529 opened Nov 9, 2021 by thomcuddihy Loading…
1
Skip hash table size estimation if already done
#450 opened May 16, 2021 by kim-fehl Loading…
Added genbank support
#418 opened Feb 24, 2021 by d-cameron Loading…
4
Refresh FTP connection for downloading libraries with --use-ftp
#406 opened Jan 26, 2021 by tokarevvasily Loading…
Fix link issue with cmake
#386 opened Dec 25, 2020 by starling13 Loading…
2
Add --priority-taxids option for database building.
#256 opened May 21, 2020 by yesimon Loading…
Use wget to handle downloading using proxies
#190 opened Dec 17, 2019 by ghost Loading…
Prefix auxiliary executables with kraken2_
#91 opened Mar 4, 2019 by yesimon Loading…
Suggestion: parallelize low complexity masking
#39 opened Aug 11, 2018 by tskir Loading…
1
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