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Dessimoz Lab

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  1. read2tree read2tree Public

    a tool for inferring species tree from sequencing reads

    Python 139 18

  2. fold_tree fold_tree Public

    snakemake pipeline for creating trees from sequence sets

    Jupyter Notebook 65 5

  3. OMArk OMArk Public

    Python 47 6

  4. phylo-io phylo-io Public

    Phylo.IO JS tree viewer

    JavaScript 28 10

  5. FastOMA FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    Python 22 6

  6. omamer omamer Public

    OMAmer - tree-driven and alignment-free protein assignment to sub-families

    Python 15 5

Repositories

Showing 10 of 39 repositories
  • nf-oma-browser-build Public

    Nextflow pipeline to convert OMA to OMA browser

    DessimozLab/nf-oma-browser-build’s past year of commit activity
    Nextflow 0 0 0 0 Updated Jul 30, 2024
  • phylo-io Public

    Phylo.IO JS tree viewer

    DessimozLab/phylo-io’s past year of commit activity
    JavaScript 28 MIT 10 5 1 Updated Jul 30, 2024
  • OmaStandalone Public

    OMA standalone repository

    DessimozLab/OmaStandalone’s past year of commit activity
    Python 2 2 5 0 Updated Jul 30, 2024
  • yeast_fusion_segmenter Public

    retrain yolov8 to segment and label yeast cells with interupted fusion phenotypes

    DessimozLab/yeast_fusion_segmenter’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 29, 2024
  • FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    DessimozLab/FastOMA’s past year of commit activity
    Python 22 MPL-2.0 6 2 2 Updated Jul 26, 2024
  • pyoma Public

    Python library to interact with OMA hdf5 files

    DessimozLab/pyoma’s past year of commit activity
    Python 1 MPL-2.0 0 0 0 Updated Jul 25, 2024
  • fold_tree Public

    snakemake pipeline for creating trees from sequence sets

    DessimozLab/fold_tree’s past year of commit activity
    Jupyter Notebook 65 MIT 5 6 0 Updated Jul 23, 2024
  • edgehog Public

    Infering ancestral synteny with hierarchical orthologous groups

    DessimozLab/edgehog’s past year of commit activity
    Python 4 0 0 1 Updated Jul 3, 2024
  • omamer Public

    OMAmer - tree-driven and alignment-free protein assignment to sub-families

    DessimozLab/omamer’s past year of commit activity
    Python 15 LGPL-3.0 5 1 0 Updated Jul 1, 2024
  • gethogs Public

    A tool to infer Hierarchical Orthologous Groups (HOGs) from pairwise orthologs

    DessimozLab/gethogs’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 18, 2024
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