move to Python3.9 (WIP)

install/dependencies/conda-recipes/astra-toolbox/build.sh

@@ -0,0 +1,21 @@
+#!/bin/bash
+
+nvcc=`command -v nvcc`
+cuda=${nvcc%/bin/nvcc}
+
+cd $SRC_DIR/build/linux
+chmod +x autogen.sh
+./autogen.sh
+
+if [ "$cuda" ]; then
+  ./configure --with-cuda=$cuda \
+              --with-python \
+              --with-install-type=module
+else
+    echo "cuda has not been found will configure without it."
+    ./configure --with-python \
+                --with-install-type=module
+fi
+
+make -j 4
+make install

install/dependencies/conda-recipes/astra-toolbox/meta.yaml

@@ -0,0 +1,34 @@
+package:
+  name: astra-toolbox
+  version: '1.9.9dev'
+
+source:
+  git_url: https://github.com/astra-toolbox/astra-toolbox.git
+  git_tag: master
+
+build:
+  number: 0
+  script_env:
+    - CC # [linux]
+
+requirements:
+  build:
+    - python
+    - numpy
+    - cython >=0.13
+    - nomkl # [not win]
+    - scipy
+    - cudatoolkit >=10.1
+    - six
+
+run:
+    - python
+    - numpy
+    - scipy
+    - six
+    - libastra ==1.9.9dev
+
+about:
+  home: http://www.astra-toolbox.com
+  license: GPLv3
+  summary: 'The ASTRA Toolbox is a Python toolbox of high-performance GPU primitives for 2D and 3D tomography.'

install/dependencies/conda-recipes/geodist/conda_build_config.yaml

@@ -0,0 +1,2 @@
+python:
+    - 3.9

install/dependencies/conda-recipes/geodist/meta.yaml

@@ -0,0 +1,36 @@
+{% set name = 'geodistk' %}
+{% set version = '0.1.6' %}
+
+package:
+  name: {{ name | lower }}
+  version: {{ version }}
+
+
+source:
+  git_url: https://github.com/taigw/GeodisTK.git
+  git_tag: master
+
+requirements:
+  build:
+    - python {{ python }}
+    - numpy
+  run:
+    - python {{ python }}
+    - numpy
+
+build:
+  number: 0
+  script:
+    - {{ PYTHON }} -m pip install .
+
+test:
+  imports:
+    - GeodisTK
+
+app:
+  summary: "Geodesic distance transform of 2d/3d images"
+
+about:
+  home: https://github.com/taigw/GeodisTK
+  license: MIT
+  license_file: LICENSE

install/dependencies/conda-recipes/morphsnakes/conda_build_config.yaml

@@ -0,0 +1,2 @@
+python:
+    - 3.9

install/dependencies/conda-recipes/morphsnakes/meta.yaml

@@ -0,0 +1,37 @@
+{% set name = 'morphsnakes' %}
+{% set version = '1.0' %}
+
+package:
+  name: {{ name | lower }}
+  version: {{ version }}
+
+source:
+  git_url: https://github.com/pmneila/morphsnakes.git
+  git_tag: master
+
+requirements:
+  build:
+    - python {{ python }}
+    - numpy
+    - scipy>=0.17.0
+  run:
+    - python {{ python }}
+    - numpy
+    - scipy>=0.17.0
+
+build:
+  number: 0
+  script:
+    - {{ PYTHON }} -m pip install .
+
+test:
+  imports:
+    - morphsnakes
+
+app:
+  summary: "Morphological Snakes for image segmentation. morphsnakes supports 2D images and 3D volumes"
+
+about:
+  home: https://github.com/pmneila/morphsnakes
+  license: MIT
+  license_file: LICENSE

install/dependencies/conda-recipes/pypwt/conda-recipe/build.sh

@@ -0,0 +1,3 @@
+#!/bin/bash
+
+python setup.py install

install/dependencies/conda-recipes/pypwt/conda-recipe/meta.yaml

@@ -0,0 +1,31 @@
+{% set version = "0.9" %}
+
+package:
+  name: pypwt
+  version: {{ version }}_{{ environ['CUDA_VERSION'] }}
+
+source:
+  url: https://github.com/dkazanc/pypwt/archive/{{ version }}.tar.gz
+
+requirements:
+  build:
+    - python
+    - pip
+    - numpy
+    - setuptools
+    - cython >=0.13
+    - cudatoolkit={{ environ['CUDA_VERSION'] }}
+
+  run:
+    - python
+    - numpy
+    - setuptools
+
+build:
+  preserve_egg_dir: False
+  number: 0
+
+about:
+  home: https://github.com/pierrepaleo/pypwt
+  license: Apache V2 and GPL V3
+  summary: 'pypwt is a python module for parallel Discrete Wavelet Transform. This is a wrapper of PDWT.'