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SPs for Formulatrix uploader + scoring
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@KarlLevik
KarlLevik committed Jan 20, 2020
1 parent 7eed2d7 commit c7a93b0
Showing 1 changed file with 147 additions and 1 deletion.
148 changes: 147 additions & 1 deletion schema/routines.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -1888,6 +1888,76 @@ DELIMITER ;
/*!50003 SET character_set_client = @saved_cs_client */ ;
/*!50003 SET character_set_results = @saved_cs_results */ ;
/*!50003 SET collation_connection = @saved_col_connection */ ;
/*!50003 DROP PROCEDURE IF EXISTS `retrieve_container_for_barcode` */;
/*!50003 SET @saved_cs_client = @@character_set_client */ ;
/*!50003 SET @saved_cs_results = @@character_set_results */ ;
/*!50003 SET @saved_col_connection = @@collation_connection */ ;
/*!50003 SET character_set_client = utf8 */ ;
/*!50003 SET character_set_results = utf8 */ ;
/*!50003 SET collation_connection = utf8_general_ci */ ;
/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
DELIMITER ;;
CREATE PROCEDURE `retrieve_container_for_barcode`(IN p_barcode varchar(45))
READS SQL DATA
COMMENT 'Return single-row result set with info about a Container identified by p_barcode'
BEGIN
IF NOT (p_barcode IS NULL) THEN
SELECT c.containerId, c.sessionId, c.dewarId "dewarId",
c.code "name", c.barcode "barcode", c.containerStatus "status",
c.containerType "type", c.capacity "capacity",
c.sampleChangerLocation "location", c.beamlineLocation "beamline",
c.comments "comments", c.experimentType "experimentType",
concat(p.proposalCode, p.proposalNumber, '-', bs.visit_number) "visit",
date_format(c.blTimeStamp, '%Y') "year"
FROM Container c
LEFT OUTER JOIN BLSession bs ON bs.sessionId = c.sessionId
LEFT OUTER JOIN Proposal p ON p.proposalId = bs.proposalId
WHERE c.barcode=p_barcode
LIMIT 1;
ELSE
SIGNAL SQLSTATE '45000' SET MYSQL_ERRNO=1644, MESSAGE_TEXT='Mandatory argument is NULL: p_barcode';
END IF;
END ;;
DELIMITER ;
/*!50003 SET sql_mode = @saved_sql_mode */ ;
/*!50003 SET character_set_client = @saved_cs_client */ ;
/*!50003 SET character_set_results = @saved_cs_results */ ;
/*!50003 SET collation_connection = @saved_col_connection */ ;
/*!50003 DROP PROCEDURE IF EXISTS `retrieve_container_for_inspection_id` */;
/*!50003 SET @saved_cs_client = @@character_set_client */ ;
/*!50003 SET @saved_cs_results = @@character_set_results */ ;
/*!50003 SET @saved_col_connection = @@collation_connection */ ;
/*!50003 SET character_set_client = utf8 */ ;
/*!50003 SET character_set_results = utf8 */ ;
/*!50003 SET collation_connection = utf8_general_ci */ ;
/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
DELIMITER ;;
CREATE PROCEDURE `retrieve_container_for_inspection_id`(IN p_containerInspectionId int(11) unsigned)
READS SQL DATA
COMMENT 'Return single-row result set with info about a Container identified by p_containerInspectionId'
BEGIN
IF NOT (p_containerInspectionId IS NULL) THEN
SELECT c.containerType, c.containerId, c.sessionId, concat(p.proposalCode, p.proposalNumber, '-', bs.visit_number) "visit",
date_format(c.blTimeStamp, '%Y') as year
FROM Container c
INNER JOIN ContainerInspection ci ON ci.containerId = c.containerId
INNER JOIN Dewar d ON d.dewarId = c.dewarId
INNER JOIN Shipping s ON s.shippingId = d.shippingId
INNER JOIN Proposal p ON p.proposalId = s.proposalId
LEFT OUTER JOIN BLSession bs ON bs.sessionId = c.sessionId
WHERE ci.containerinspectionId = p_containerInspectionId
LIMIT 1;
ELSE
SIGNAL SQLSTATE '45000' SET MYSQL_ERRNO=1644, MESSAGE_TEXT='Mandatory argument is NULL: p_containerInspectionId';
END IF;
END ;;
DELIMITER ;
/*!50003 SET sql_mode = @saved_sql_mode */ ;
/*!50003 SET character_set_client = @saved_cs_client */ ;
/*!50003 SET character_set_results = @saved_cs_results */ ;
/*!50003 SET collation_connection = @saved_col_connection */ ;
/*!50003 DROP PROCEDURE IF EXISTS `retrieve_container_info` */;
/*!50003 SET @saved_cs_client = @@character_set_client */ ;
/*!50003 SET @saved_cs_results = @@character_set_results */ ;
Expand Down Expand Up @@ -3921,6 +3991,38 @@ DELIMITER ;
/*!50003 SET character_set_client = @saved_cs_client */ ;
/*!50003 SET character_set_results = @saved_cs_results */ ;
/*!50003 SET collation_connection = @saved_col_connection */ ;
/*!50003 DROP PROCEDURE IF EXISTS `retrieve_sample_for_container_id_and_location` */;
/*!50003 SET @saved_cs_client = @@character_set_client */ ;
/*!50003 SET @saved_cs_results = @@character_set_results */ ;
/*!50003 SET @saved_col_connection = @@collation_connection */ ;
/*!50003 SET character_set_client = utf8 */ ;
/*!50003 SET character_set_results = utf8 */ ;
/*!50003 SET collation_connection = utf8_general_ci */ ;
/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
DELIMITER ;;
CREATE PROCEDURE `retrieve_sample_for_container_id_and_location`(IN p_containerId int(11) unsigned, p_location varchar(45))
READS SQL DATA
COMMENT 'Return single-row result set with info about a BLSample identified by p_containerId and p_location'
BEGIN
IF NOT (p_containerId IS NULL OR p_location IS NULL) THEN
SELECT bls.blSampleId "sampleId",
bls.name "sampleName",
bls.code "sampleCode",
bls.comments "sampleComments",
bls.location "sampleLocation"
FROM BLSample bls
WHERE bls.location = p_location AND bls.containerId = p_containerId
LIMIT 1;
ELSE
SIGNAL SQLSTATE '45000' SET MYSQL_ERRNO=1644, MESSAGE_TEXT='Mandatory argument(s) are NULL: p_containerId and/or p_location';
END IF;
END ;;
DELIMITER ;
/*!50003 SET sql_mode = @saved_sql_mode */ ;
/*!50003 SET character_set_client = @saved_cs_client */ ;
/*!50003 SET character_set_results = @saved_cs_results */ ;
/*!50003 SET collation_connection = @saved_col_connection */ ;
/*!50003 DROP PROCEDURE IF EXISTS `retrieve_sample_groups_for_sample` */;
/*!50003 SET @saved_cs_client = @@character_set_client */ ;
/*!50003 SET @saved_cs_results = @@character_set_results */ ;
Expand Down Expand Up @@ -7309,6 +7411,50 @@ DELIMITER ;
/*!50003 SET character_set_client = @saved_cs_client */ ;
/*!50003 SET character_set_results = @saved_cs_results */ ;
/*!50003 SET collation_connection = @saved_col_connection */ ;
/*!50003 DROP PROCEDURE IF EXISTS `upsert_sample_image` */;
/*!50003 SET @saved_cs_client = @@character_set_client */ ;
/*!50003 SET @saved_cs_results = @@character_set_results */ ;
/*!50003 SET @saved_col_connection = @@collation_connection */ ;
/*!50003 SET character_set_client = utf8 */ ;
/*!50003 SET character_set_results = utf8 */ ;
/*!50003 SET collation_connection = utf8_general_ci */ ;
/*!50003 SET @saved_sql_mode = @@sql_mode */ ;
/*!50003 SET sql_mode = 'STRICT_TRANS_TABLES,ERROR_FOR_DIVISION_BY_ZERO,NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION' */ ;
DELIMITER ;;
CREATE PROCEDURE `upsert_sample_image`(
INOUT p_id int(11) unsigned,
p_sampleId int(11) unsigned,
p_containerInspectionId int(11) unsigned,
p_micronsPerPixelX float,
p_micronsPerPixelY float,
p_imageFullPath varchar(255),
p_comments varchar(255)
)
MODIFIES SQL DATA
COMMENT 'If p_id is not provided, inserts new row and returns ID in p_id. Otherwise updates existing row.'
BEGIN
IF p_id IS NULL THEN
INSERT INTO BLSampleImage (blSampleId, containerInspectionId, micronsPerPixelX, micronsPerPixelY, imageFullPath, comments, blTimeStamp)
VALUES (p_sampleId, p_containerInspectionId, p_micronsPerPixelX, p_micronsPerPixelY, p_imageFullPath, p_comments, current_timestamp);
SET p_id = LAST_INSERT_ID();

ELSE
UPDATE BLSampleImage
SET
blSampleId = IFNULL(p_sampleId, blSampleId),
containerInspectionId = IFNULL(p_containerInspectionId, containerInspectionId),
micronsPerPixelX = IFNULL(p_micronsPerPixelX, micronsPerPixelX),
micronsPerPixelY = IFNULL(p_micronsPerPixelY, micronsPerPixelY),
imageFullPath = IFNULL(p_imageFullPath, imageFullPath),
comments = IFNULL(p_comments, comments)
WHERE blSampleImageId = p_id;
END IF;
END ;;
DELIMITER ;
/*!50003 SET sql_mode = @saved_sql_mode */ ;
/*!50003 SET character_set_client = @saved_cs_client */ ;
/*!50003 SET character_set_results = @saved_cs_results */ ;
/*!50003 SET collation_connection = @saved_col_connection */ ;
/*!50003 DROP PROCEDURE IF EXISTS `upsert_sample_image_analysis` */;
/*!50003 SET @saved_cs_client = @@character_set_client */ ;
/*!50003 SET @saved_cs_results = @@character_set_results */ ;
Expand Down Expand Up @@ -7702,4 +7848,4 @@ DELIMITER ;
/*!40101 SET COLLATION_CONNECTION=@OLD_COLLATION_CONNECTION */;
/*!40111 SET SQL_NOTES=@OLD_SQL_NOTES */;

-- Dump completed on 2020-01-07 9:42:18
-- Dump completed on 2020-01-20 16:21:09

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