Use full micrograph path for CTF and autopick

DiamondLightSource · Oct 26, 2023 · 9817b8e · 9817b8e
1 parent 57d9b9b
commit 9817b8e
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/src/relion/_parser/autopick.py b/src/relion/_parser/autopick.py
@@ -81,7 +81,7 @@ def _load_job_directory(self, jobdir):
             particle_picker_info.append(
                 ParticlePickerInfo(
                     int(np),
-                    mic,
+                    str(self._basepath.parent / mic),
                     str(self._basepath.parent / mic).replace(".mrc", ".jpeg"),
                     first_mc_micrograph,
                     str(highlighted_micrograph),

diff --git a/src/relion/_parser/ctffind.py b/src/relion/_parser/ctffind.py
@@ -96,7 +96,7 @@ def _load_job_directory(self, jobdir):
             )
             micrograph_list.append(
                 CTFMicrograph(
-                    micrograph_name[j],
+                    str(self._basepath.parent / micrograph_name[j]),
                     astigmatism[j],
                     defocus_u[j],
                     defocus_v[j],