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Merge pull request #2221 from EBISPOT/response_to_term_efo_2195
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Added 'response to' term
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@ar-ibrahim
ar-ibrahim authored May 14, 2024
2 parents a275b0f + bcb2d52 commit 8f8e9b3
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54 changes: 35 additions & 19 deletions efo-base.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -24495,7 +24495,7 @@ label: abdominal cavity</efo:reason_for_obsolescence>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0000220"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>lymphoblastic leukemia, acute</owl:annotatedTarget>
<oboInOwl:hasDbXref>MONDO:patterns/acute</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/acute</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0000220"/>
Expand Down Expand Up @@ -24986,7 +24986,7 @@ label: abdominal cavity</efo:reason_for_obsolescence>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0000221"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>monocytic leukemia, acute</owl:annotatedTarget>
<oboInOwl:hasDbXref>MONDO:patterns/acute</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/acute</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0000221"/>
Expand Down Expand Up @@ -25622,7 +25622,7 @@ label: abdominal cavity</efo:reason_for_obsolescence>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0000222"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>myeloid leukemia, acute</owl:annotatedTarget>
<oboInOwl:hasDbXref>MONDO:patterns/acute</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/acute</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0000222"/>
Expand Down Expand Up @@ -114681,7 +114681,7 @@ A Jiyoye is bearer of a Burkitt&apos;s lymphoma.</obo:IAO_0000115>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0002422"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>neoplasm (disease), benign</owl:annotatedTarget>
<oboInOwl:hasDbXref>MONDO:patterns/benign</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/benign</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0002422"/>
Expand Down Expand Up @@ -397976,15 +397976,15 @@ to hypernasality and abnormal speech reduction.</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GARD:16281</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:0060714</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OMIM:617993</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>tumoral calcinosis, hyperphosphatemic, familial, 2</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tumoral calcinosis, hyperphosphatemic, familial, 2</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>HFTC2</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym>tumoral calcinosis, hyperphosphatemic, familial, 2</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tumoral calcinosis, hyperphosphatemic, familial, 2</oboInOwl:hasRelatedSynonym>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EFO:0009383</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/mondo#gard_rare"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/mondo#nord_rare"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/mondo#otar"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/mondo#rare"/>
<rdfs:label>tumoral calcinosis, hyperphosphatemic, familial, 2</rdfs:label>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tumoral calcinosis, hyperphosphatemic, familial, 2</rdfs:label>
<skos:exactMatch rdf:resource="http://identifiers.org/omim/617993"/>
</owl:Class>
<owl:Axiom>
Expand All @@ -398008,19 +398008,19 @@ to hypernasality and abnormal speech reduction.</obo:IAO_0000115>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0009383"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>tumoral calcinosis, hyperphosphatemic, familial, 2</owl:annotatedTarget>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tumoral calcinosis, hyperphosphatemic, familial, 2</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OMIM:617993</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0009383"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>tumoral calcinosis, hyperphosphatemic, familial, 2</owl:annotatedTarget>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tumoral calcinosis, hyperphosphatemic, familial, 2</owl:annotatedTarget>
<rdfs:comment>Mondo preferred label 15.08.2021.</rdfs:comment>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0009383"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>tumoral calcinosis, hyperphosphatemic, familial, 2</owl:annotatedTarget>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tumoral calcinosis, hyperphosphatemic, familial, 2</owl:annotatedTarget>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preferred label from MONDO</rdfs:comment>
</owl:Axiom>
<owl:Axiom>
Expand All @@ -398033,7 +398033,7 @@ to hypernasality and abnormal speech reduction.</obo:IAO_0000115>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0009383"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget>tumoral calcinosis, hyperphosphatemic, familial, 2</owl:annotatedTarget>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tumoral calcinosis, hyperphosphatemic, familial, 2</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OMIM:617993</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
Expand Down Expand Up @@ -543507,6 +543507,22 @@ Smart-seq3 is a continuation and improvement of the Smart-seq technology, specif



<!-- http://www.ebi.ac.uk/efo/EFO_0803689 -->

<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0803689">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0009410"/>
<obo:IAO_0000115>A trait that affects the response to a stimulus with traditional medicine products.</obo:IAO_0000115>
<rdfs:label xml:lang="en">trait in response to traditional medicine</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0803689"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A trait that affects the response to a stimulus with traditional medicine products.</owl:annotatedTarget>
<efo:definition_citation>PMID:36583370</efo:definition_citation>
</owl:Axiom>



<!-- http://www.ebi.ac.uk/efo/EFO_1000003 -->

<owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_1000003">
Expand Down Expand Up @@ -546004,7 +546020,7 @@ A syndrome typically consisting of angina (cardiac chest pain) at rest that occu
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000028"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>ependymoma, benign</owl:annotatedTarget>
<oboInOwl:hasDbXref>MONDO:patterns/benign</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/benign</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000028"/>
Expand Down Expand Up @@ -546035,7 +546051,7 @@ A syndrome typically consisting of angina (cardiac chest pain) at rest that occu
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000028"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"/>
<owl:annotatedTarget>ependymoma, benign</owl:annotatedTarget>
<oboInOwl:hasDbXref>MONDO:patterns/benign</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/benign</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000028"/>
Expand Down Expand Up @@ -551086,7 +551102,7 @@ Label : Disorder of carbohydrate metabolism</efo:reason_for_obsolescence>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000062"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">lactase persistence</owl:annotatedTarget>
<oboInOwl:hasDbXref>OMIM:223100</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OMIM:223100</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000062"/>
Expand Down Expand Up @@ -558017,7 +558033,7 @@ Label : Disorder of carbohydrate metabolism</efo:reason_for_obsolescence>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000106"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>adrenal gland pheochromocytoma, benign</owl:annotatedTarget>
<oboInOwl:hasDbXref>MONDO:patterns/benign</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/benign</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000106"/>
Expand Down Expand Up @@ -558310,7 +558326,7 @@ Label : Disorder of carbohydrate metabolism</efo:reason_for_obsolescence>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000108"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>carotid body paraganglioma, benign</owl:annotatedTarget>
<oboInOwl:hasDbXref>MONDO:patterns/benign</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/benign</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000108"/>
Expand Down Expand Up @@ -595867,7 +595883,7 @@ Label : malignant epithelioid mesothelioma</efo:reason_for_obsolescence>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000364"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>sarcoma of mast cell</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/sarcoma</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MONDO:patterns/sarcoma</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000364"/>
Expand Down Expand Up @@ -612115,7 +612131,7 @@ Use: http://www.ebi.ac.uk/efo/EFO_0000197 Label: mucinous carcinoma</efo:reason_
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000485"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"/>
<owl:annotatedTarget>pleural mesothelioma (disease), benign</owl:annotatedTarget>
<oboInOwl:hasDbXref>MONDO:patterns/benign</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/benign</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000485"/>
Expand Down Expand Up @@ -694395,7 +694411,7 @@ Label: Moebius syndrome</efo:reason_for_obsolescence>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001080"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>pulmonary sulcus neoplasm, malignant</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/malignant</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MONDO:patterns/malignant</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001080"/>
Expand Down
9 changes: 8 additions & 1 deletion src/ontology/efo-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -20998,6 +20998,7 @@ Declaration(Class(efo:EFO_0803685))
Declaration(Class(efo:EFO_0803686))
Declaration(Class(efo:EFO_0803687))
Declaration(Class(efo:EFO_0803688))
Declaration(Class(efo:EFO_0803689))
Declaration(Class(efo:EFO_1000003))
Declaration(Class(efo:EFO_1000012))
Declaration(Class(efo:EFO_1000013))
Expand Down Expand Up @@ -29554,7 +29555,7 @@ AnnotationAssertion(rdfs:label obo:RO_0001025 "located_in")

AnnotationAssertion(rdfs:label obo:RO_0002104 "has_plasma_membrane_part")

# Object Property: obo:RO_0002160 (only in taxon)
# Object Property: obo:RO_0002160 (only_in_taxon)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:20973947") obo:IAO_0000115 obo:RO_0002160 "S only_in_taxon T iff: S SubClassOf in_taxon only T")
AnnotationAssertion(oboInOwl:hasDbXref obo:RO_0002160 "RO:0002160")
Expand Down Expand Up @@ -237350,6 +237351,12 @@ AnnotationAssertion(rdfs:comment efo:EFO_0803688 "Review for potential replaceme
AnnotationAssertion(rdfs:label efo:EFO_0803688 "SARS coronavirus seropositivity")
SubClassOf(efo:EFO_0803688 efo:EFO_0803595)

# Class: efo:EFO_0803689 (trait in response to traditional medicine)

AnnotationAssertion(Annotation(efo:definition_citation "PMID:36583370") obo:IAO_0000115 efo:EFO_0803689 "A trait that affects the response to a stimulus with traditional medicine products.")
AnnotationAssertion(rdfs:label efo:EFO_0803689 "trait in response to traditional medicine"@en)
SubClassOf(efo:EFO_0803689 obo:GO_0009410)

# Class: efo:EFO_1000003 (Zinc deficiency)

AnnotationAssertion(obo:IAO_0000115 efo:EFO_1000003 "A deficiency of the essential metal Zinc; an essential cofactor for many enzymes. Zinc deficiency is caused by a lack of zinc in the diet, loss of zinc after absorption, for example through loss through burns, inability to absorb Zinc, or increased loss through exercise. ")
Expand Down

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