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@EBIvariation

EBI Variation

The Variation team from EMBL-EBI develops several bioinformatics projects such as EVA, DGVa and EGA

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  1. vcf-validator vcf-validator Public

    Validation suite for Variant Call Format (VCF) files, implemented using C++11

    C++ 132 41

  2. eva-pipeline eva-pipeline Public

    Genomic variation pipeline for the European Variation Archive, implemented using Spring Batch

    Java 5 24

  3. eva-ws eva-ws Public

    European Variation Archive REST web services API

    Java 6 21

  4. eva-web eva-web Public

    Web front-end for the European Variation Archive

    JavaScript 5 10

  5. eva-tools eva-tools Public

    Tools compatible with the infrastructure of the European Variation Archive pipeline

    Java 1 13

  6. variation-commons variation-commons Public

    Library of core components used by multiple EBI Variation projects

    Java 2 16

Repositories

Showing 10 of 48 repositories
  • vcf-validator Public

    Validation suite for Variant Call Format (VCF) files, implemented using C++11

    EBIvariation/vcf-validator’s past year of commit activity
    C++ 132 Apache-2.0 41 4 5 Updated Dec 18, 2024
  • eva-tasks Public

    Code used to to perform tasks or one of analysis.

    EBIvariation/eva-tasks’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 6 0 0 Updated Dec 16, 2024
  • CMAT Public

    ClinVar Mapping and Annotation Toolkit

    EBIvariation/CMAT’s past year of commit activity
    Jupyter Notebook 19 Apache-2.0 10 57 0 Updated Dec 3, 2024
  • eva-pipeline Public

    Genomic variation pipeline for the European Variation Archive, implemented using Spring Batch

    EBIvariation/eva-pipeline’s past year of commit activity
    Java 5 Apache-2.0 24 0 8 Updated Dec 3, 2024
  • eva-sub-cli Public

    EVA Submission Command Line Interface for Validation

    EBIvariation/eva-sub-cli’s past year of commit activity
    HTML 0 Apache-2.0 4 0 0 Updated Dec 2, 2024
  • eva-submission Public

    Components that connect and automate main tasks in the EVA submission workflow

    EBIvariation/eva-submission’s past year of commit activity
    Python 1 Apache-2.0 7 0 5 Updated Nov 15, 2024
  • eva-common-pyutils Public

    EBI EVA - Common Python Utilities

    EBIvariation/eva-common-pyutils’s past year of commit activity
    Python 0 Apache-2.0 6 0 0 Updated Nov 15, 2024
  • variant-remapping Public

    The pipeline for remapping VCF variants between two arbitrary FASTA assemblies.

    EBIvariation/variant-remapping’s past year of commit activity
    Python 5 Apache-2.0 7 6 1 Updated Nov 4, 2024
  • eva-ws Public

    European Variation Archive REST web services API

    EBIvariation/eva-ws’s past year of commit activity
    Java 6 Apache-2.0 21 0 10 Updated Oct 29, 2024
  • eva-submission-ws Public

    Web services for EVA Submissions

    EBIvariation/eva-submission-ws’s past year of commit activity
    Java 0 Apache-2.0 4 0 1 Updated Oct 25, 2024
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