v1.5.2

Brokering

• csi generated without .gz to accommodate ENA validation

v1.5.1

Validation

• Check assembly report for multiple synonyms for the same contig

Brokering

• Remove tbi index generation and upload to ENA

Ingestion

• Support for metadata load when adding to an existing project

Misc

• migrate script do not crash when specifying a project that has not been used yet

v1.5.0

Ingestion

• Fix VEP cache download and directory extraction

Backlog preparation

• New option to keep the configuration as is
• update_metadata script now check assembly_set_id coherence
• New script to retrieve VCF and tabix files from ENA when they do not exist in EVAPRO

Codon support

• automated deployment in codon
• Add support for FTP copies in datamovers nodes
• New Script to migrate in-progress submissions
• Set a cipher that will work on Codon

v1.4.3

Backlog preparation

• New option to force validation to pass
• Enable project and analysis accessions to be set on command line

Ingestion

• Ability to resume Nextflow processes within ingestion

v1.4.2

Backlog preparation

• Require latest vcf_merge and retrieve the csi index if it exists

Ingestion

• Fix for running annotation only

v1.4.1

Accessioning

• Adding count service credentials to accessioning properties file

v1.4.0

All

• Adding logging to single file across each step

Brokering

• Update metadata file correctly after merge

Backlog preparation

• Fix bug in post merge check

Ingestion

• Allow running loading step with annotation only
• Add warning when the browsable files are different from analysis files

v1.3.2

Brokering:

• Do not retry brokering preparation when it has already been done
• Fix brokering to existing projects

Backlog preparation

• Share ELOAD config to ensure prep and validation can communicate

v1.3.1

Ingestion:

• Fix the annotation metadata collection name

v1.3.0

Ingestion:

• metadata: update assembly_set_id in analysis after loading from ENA
• VEP cache resolution is based on the assembly

Backlog preparation

• New option to merge the VCF before ingestion

Other

• new script to run metadata update if they did not occur during ingestion