Merge branch 'development' into fix_read_raw_data

.github/workflows/clang_sanitizers.yml

@@ -15,8 +15,7 @@ concurrency:
 jobs:
   build_UB_sanitizer:
     name: Clang UB sanitizer
-    runs-on: ubuntu-22.04
-    container: ubuntu:23.10
+    runs-on: ubuntu-24.04
     if: github.event.pull_request.draft == false
     env:
       CC: clang
@@ -65,10 +64,6 @@ jobs:
     - name: run with UB sanitizer
       run: |
 
-        # We need these two lines because these tests run inside a docker container
-        export OMPI_ALLOW_RUN_AS_ROOT=1
-        export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
-
         export OMP_NUM_THREADS=2
 
         #MPI implementations often leak memory
@@ -81,9 +76,9 @@ jobs:
 
   build_thread_sanitizer:
     name: Clang thread sanitizer
-    runs-on: ubuntu-22.04
-    container: ubuntu:23.10
-    if: github.event.pull_request.draft == false
+    runs-on: ubuntu-24.04
+    # TODO Fix data race conditions and re-enable job
+    if: 0 #github.event.pull_request.draft == false
     env:
       CC: clang
       CXX: clang++
@@ -149,10 +144,6 @@ jobs:
         export TSAN_OPTIONS='ignore_noninstrumented_modules=1'
         export ARCHER_OPTIONS="verbose=1"
 
-        # We need these two lines because these tests run inside a docker container
-        export OMPI_ALLOW_RUN_AS_ROOT=1
-        export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
-
         export OMP_NUM_THREADS=2
 
         mpirun -n 2 ./build/bin/warpx.rz Examples/Physics_applications/laser_acceleration/inputs_base_rz warpx.serialize_initial_conditions = 0

.github/workflows/dependencies/clang17.sh

@@ -7,11 +7,6 @@
 
 set -eu -o pipefail
 
-# This dependency file is currently used within a docker container,
-# which does not come with sudo.
-apt-get -qqq update
-apt-get -y install sudo
-
 # `man apt.conf`:
 #   Number of retries to perform. If this is non-zero APT will retry
 #   failed files the given number of times.

.pre-commit-config.yaml

@@ -69,7 +69,7 @@ repos:
 # Python: Ruff linter & formatter
 #   https://docs.astral.sh/ruff/
 - repo: https://github.com/astral-sh/ruff-pre-commit
-  rev: v0.7.4
+  rev: v0.8.1
   hooks:
     # Run the linter
     - id: ruff