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@ENCODE-DCC

ENCODE DCC

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  1. encoded encoded Public

    Metadata database for ENCODE project

    JavaScript 111 51

  2. snovault snovault Public

    The SnoVault general purpose hybrid object-relational database

    Python 16 8

  3. checkfiles checkfiles Public

    Files are checked to see if the MD5 sum (both for gzipped and ungzipped) is identical to the submitted metadata, as well as run through the validateFiles program from jksrc.

    Python 2

  4. pyencoded-tools pyencoded-tools Public

    Jupyter Notebook 10 13

  5. WranglerScripts WranglerScripts Public

    Collection of scripts used by the wranglers to interact with the servers

    Python 5 4

Repositories

Showing 10 of 123 repositories
  • geo-submission Public
    ENCODE-DCC/geo-submission’s past year of commit activity
    Python 3 MIT 2 0 1 Updated Dec 3, 2024
  • encoded Public

    Metadata database for ENCODE project

    ENCODE-DCC/encoded’s past year of commit activity
    JavaScript 111 MIT 51 4 55 Updated Nov 18, 2024
  • regulome-encoded Public

    Temp repo for regulome development

    ENCODE-DCC/regulome-encoded’s past year of commit activity
    JavaScript 1 MIT 4 2 16 Updated Nov 15, 2024
  • checkfiles Public

    Files are checked to see if the MD5 sum (both for gzipped and ungzipped) is identical to the submitted metadata, as well as run through the validateFiles program from jksrc.

    ENCODE-DCC/checkfiles’s past year of commit activity
    Python 2 MIT 0 0 1 Updated Oct 2, 2024
  • kentUtils Public

    UCSC command line bioinformatic utilities

    ENCODE-DCC/kentUtils’s past year of commit activity
    C 170 95 15 1 Updated Jul 31, 2024
  • genomic-data-service Public

    Flask based web service providing genomic region search, based on regulomedb.org

    ENCODE-DCC/genomic-data-service’s past year of commit activity
    Python 5 MIT 2 1 0 Updated Jul 23, 2024
  • atac-seq-pipeline Public

    ENCODE ATAC-seq pipeline

    ENCODE-DCC/atac-seq-pipeline’s past year of commit activity
    Python 394 MIT 173 88 2 Updated Jul 18, 2024
  • snovault Public

    The SnoVault general purpose hybrid object-relational database

    ENCODE-DCC/snovault’s past year of commit activity
    Python 16 MIT 8 2 28 Updated Mar 7, 2024
  • chip-seq-pipeline2 Public

    ENCODE ChIP-seq pipeline

    ENCODE-DCC/chip-seq-pipeline2’s past year of commit activity
    Python 249 MIT 123 49 0 Updated Feb 15, 2024
  • hic-pipeline Public

    HiC uniform processing pipeline

    ENCODE-DCC/hic-pipeline’s past year of commit activity
    WDL 57 MIT 24 5 2 Updated Nov 8, 2023
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