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TryUseNativeMKL #766

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@DTTerastar DTTerastar commented Oct 6, 2024

Summary by CodeRabbit

  • New Features
    • Enhanced numerical computation capabilities by integrating MathNet.Numerics with native MKL support for improved performance.
    • Added support for Node.js and Intel MKL in the Docker build process.
  • Bug Fixes
    • Ensured proper restoration of dependencies for the project.
  • Chores
    • Updated Dockerfile to streamline the build process and improve clarity and organization, including cleanup commands for efficiency.
    • Improved environment variable declarations for consistency.

@DTTerastar DTTerastar temporarily deployed to CI - release environment October 6, 2024 12:59 — with GitHub Actions Inactive
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coderabbitai bot commented Oct 6, 2024

Walkthrough

The changes involve modifications to the Dockerfile and the src/Program.cs file to enhance the build process and integrate new dependencies. The Dockerfile updates include improved organization, the installation of Node.js, and the MathNet.Numerics.Providers.MKL package, along with conditional logic for platform-specific Intel MKL installation. In src/Program.cs, a new line is added to enable MathNet.Numerics to utilize native MKL support, improving numerical computation capabilities.

Changes

File Change Summary
Dockerfile Updated for clarity and organization; streamlined Node.js installation, added MathNet.Numerics.Providers.MKL package, and included conditional Intel MKL installation for x86_64 architecture.
src/Program.cs Added a line to integrate MathNet.Numerics with native MKL support.

Possibly related PRs

  • Nicer Dockerfile #773: The changes in this PR also focus on improving the clarity and organization of the Dockerfile, including consolidating commands and enhancing readability, which aligns with the modifications made in the main PR.

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In the land of code where rabbits play,
New tools and packages brighten the day.
With MathNet's might and Node's swift grace,
Our Docker's now a faster place!
Hopping through builds, oh what a thrill,
Optimized paths, we code with skill! 🐇✨


📜 Recent review details

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Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between df39945 and 8c0c42b.

📒 Files selected for processing (2)
  • Dockerfile (1 hunks)
  • src/Program.cs (1 hunks)
🚧 Files skipped from review as they are similar to previous changes (2)
  • Dockerfile
  • src/Program.cs

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Actionable comments posted: 3

🧹 Outside diff range and nitpick comments (2)
src/Program.cs (2)

26-26: Approved: Good addition for performance improvement.

The integration of native MKL support can significantly enhance numerical computation performance. This is a valuable optimization.

However, consider the following suggestions:

  1. Add error handling and logging for cases where MKL is not available. This will help in troubleshooting deployment issues.
  2. Document the expected performance impact and any new deployment requirements (e.g., MKL libraries) in the project documentation.

Consider wrapping the MKL initialization in a try-catch block and logging the result:

try
{
    var mklEnabled = MathNet.Numerics.Control.TryUseNativeMKL();
    Log.Logger.Information($"Native MKL support {(mklEnabled ? "enabled" : "not available")}");
}
catch (Exception ex)
{
    Log.Logger.Warning(ex, "Error while trying to enable native MKL support");
}

This approach provides more visibility into the MKL initialization process and helps with debugging in different environments.


26-27: Consider impact on testing and deployment pipelines.

The addition of native MKL support is well-placed in the startup sequence. However, it's important to consider the following:

  1. Ensure that your testing environments (including CI/CD pipelines) have MKL libraries available, or that tests can run successfully without MKL.
  2. Update your deployment documentation to include MKL as a new dependency.
  3. Consider adding a configuration option to enable/disable MKL usage, which could be useful for debugging or environments where MKL is not available.

To add a configuration option, you could modify the code as follows:

var useMkl = builder.Configuration.GetValue<bool>("UseMKL", true);
if (useMkl)
{
    MathNet.Numerics.Control.TryUseNativeMKL();
}
Log.Logger.Information(MathNet.Numerics.Control.Describe().Trim('\r','\n'));

This allows you to control MKL usage through configuration, providing flexibility across different environments.

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 6e9bfd6 and ee2f9ea.

📒 Files selected for processing (2)
  • Dockerfile (2 hunks)
  • src/Program.cs (1 hunks)
🧰 Additional context used
🔇 Additional comments (2)
Dockerfile (2)

21-22: Addition of MKL Provider Package

The command correctly adds the MathNet.Numerics.Providers.MKL package to the project, enabling MKL support.


32-39: Verify the availability of Intel MKL packages

Ensure that the Intel MKL repository is accessible and the package names are correct for the target platform.

Run the following script to check available MKL packages:

Dockerfile Outdated
Comment on lines 32 to 48
RUN if [ "${TARGETPLATFORM}" = "linux/amd64" ]; then \
apt-get update && apt-get install -y apt-transport-https gnupg software-properties-common wget && \
wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB && \
apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB && \
rm GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB && \
echo "deb https://apt.repos.intel.com/mkl all main" > /etc/apt/sources.list.d/intel-mkl.list && \
apt-get update && apt-get install -y intel-mkl-64bit-2020.0-088; \
fi
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⚠️ Potential issue

Ensure TARGETPLATFORM is declared in this stage

The TARGETPLATFORM variable may not be available in this stage because ARG variables are scoped to the build stage in which they are declared. To use TARGETPLATFORM in the second stage, you need to redeclare it.

Apply this diff to declare ARG TARGETPLATFORM in the second stage:

 FROM mcr.microsoft.com/dotnet/aspnet:8.0
+ARG TARGETPLATFORM
 WORKDIR /App

Committable suggestion was skipped due to low confidence.


🛠️ Refactor suggestion

Consider installing the latest MKL package version

Specifying a fixed version (intel-mkl-64bit-2020.0-088) may prevent you from receiving updates and fixes in newer versions. Consider installing the latest available version to benefit from improvements.

Modify the installation command:

       apt-get update && \
-      apt-get install -y intel-mkl-64bit-2020.0-088; \
+      apt-get install -y intel-mkl-64bit; \
    fi
📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
RUN if [ "${TARGETPLATFORM}" = "linux/amd64" ]; then \
apt-get update && apt-get install -y apt-transport-https gnupg software-properties-common wget && \
wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB && \
apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB && \
rm GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB && \
echo "deb https://apt.repos.intel.com/mkl all main" > /etc/apt/sources.list.d/intel-mkl.list && \
apt-get update && apt-get install -y intel-mkl-64bit-2020.0-088; \
fi
RUN if [ "${TARGETPLATFORM}" = "linux/amd64" ]; then \
apt-get update && apt-get install -y apt-transport-https gnupg software-properties-common wget && \
wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB && \
apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB && \
rm GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB && \
echo "deb https://apt.repos.intel.com/mkl all main" > /etc/apt/sources.list.d/intel-mkl.list && \
apt-get update && \
apt-get install -y intel-mkl-64bit; \
fi

🛠️ Refactor suggestion

Update deprecated apt-key usage

The use of apt-key add is deprecated in recent Debian-based systems. It's recommended to add repository keys to /etc/apt/trusted.gpg.d/ and use signed repositories.

Refactor the key addition as follows:

 RUN if [ "${TARGETPLATFORM}" = "linux/amd64" ]; then \
       apt-get update && apt-get install -y apt-transport-https gnupg software-properties-common wget && \
-      wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB && \
-      apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB && \
-      rm GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB && \
+      wget -qO - https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor -o /usr/share/keyrings/intel-software.gpg && \
       echo "deb [signed-by=/usr/share/keyrings/intel-software.gpg] https://apt.repos.intel.com/mkl all main" > /etc/apt/sources.list.d/intel-mkl.list && \
       apt-get update && apt-get install -y intel-mkl-64bit-2020.0-088; \
    fi
📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
RUN if [ "${TARGETPLATFORM}" = "linux/amd64" ]; then \
apt-get update && apt-get install -y apt-transport-https gnupg software-properties-common wget && \
wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB && \
apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB && \
rm GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB && \
echo "deb https://apt.repos.intel.com/mkl all main" > /etc/apt/sources.list.d/intel-mkl.list && \
apt-get update && apt-get install -y intel-mkl-64bit-2020.0-088; \
fi
RUN if [ "${TARGETPLATFORM}" = "linux/amd64" ]; then \
apt-get update && apt-get install -y apt-transport-https gnupg software-properties-common wget && \
wget -qO - https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor -o /usr/share/keyrings/intel-software.gpg && \
echo "deb [signed-by=/usr/share/keyrings/intel-software.gpg] https://apt.repos.intel.com/mkl all main" > /etc/apt/sources.list.d/intel-mkl.list && \
apt-get update && apt-get install -y intel-mkl-64bit-2020.0-088; \
fi

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