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Eichler Lab

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  1. pav pav Public

    Phased assembly variant caller

    Python 107 8

  2. smrtsv2 smrtsv2 Public

    Structural variant caller

    Python 54 6

  3. svpop svpop Public

    Variant annotation and merging pipeline

    Python 31 6

  4. pacbio_variant_caller pacbio_variant_caller Public archive

    SMRT-SV: Structural variant and indel caller for PacBio reads

    Python 28 15

  5. vcf-flow vcf-flow Public

    Forked from huddlej/tab-to-vcf

    Convert tab-delimited file into a VCF

    Python 8 2

  6. chm1_scripts chm1_scripts Public

    Python 8 5

Repositories

Showing 10 of 79 repositories
  • docker_hub Public

    Repository for Testing Automatic Builds with Docker Hub

    EichlerLab/docker_hub’s past year of commit activity
    Dockerfile 1 1 0 0 Updated Jan 17, 2025
  • CDR-Finder Public

    Workflow to identify the centromere dip regions (CDR) from methyl BAMs

    EichlerLab/CDR-Finder’s past year of commit activity
    Python 6 1 0 0 Updated Jan 15, 2025
  • back-reference-qc Public Forked from projectoriented/back-reference-qc

    Detect outlier long-reads by using its Illumina counterpart.

    EichlerLab/back-reference-qc’s past year of commit activity
    Python 0 2 0 0 Updated Jan 7, 2025
  • svpop Public

    Variant annotation and merging pipeline

    EichlerLab/svpop’s past year of commit activity
    Python 31 6 3 0 Updated Jan 6, 2025
  • compteam_tools Public

    A collection of custom scripts for everyday long read analysis

    EichlerLab/compteam_tools’s past year of commit activity
    Python 0 1 0 0 Updated Dec 19, 2024
  • audano_curve Public
    EichlerLab/audano_curve’s past year of commit activity
    Python 0 0 0 0 Updated Dec 10, 2024
  • pav Public

    Phased assembly variant caller

    EichlerLab/pav’s past year of commit activity
    Python 107 8 12 0 Updated Dec 4, 2024
  • AoU_WDL Public

    Repository for storing WDL workflows for execution in the AoU Researcher Workbench

    EichlerLab/AoU_WDL’s past year of commit activity
    WDL 0 1 0 0 Updated Nov 27, 2024
  • assembly_qc Public Forked from youngjun0827/assembly_qc

    assembly QC pipeline starts with foreign contamination screening

    EichlerLab/assembly_qc’s past year of commit activity
    Python 0 1 0 0 Updated Oct 31, 2024
  • snakemake_pipelines Public

    General Snakemake pipelines.

    EichlerLab/snakemake_pipelines’s past year of commit activity
    Python 0 0 0 0 Updated Oct 21, 2024
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