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update imports
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@matentzn
matentzn committed Jan 13, 2024
1 parent c2b06e7 commit ba8c01a
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Showing 14 changed files with 58,212 additions and 66,825 deletions.
92 changes: 46 additions & 46 deletions src/ontology/components/obsoletes.owl
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85,732 changes: 43,438 additions & 42,294 deletions src/ontology/imports/chebi_import.owl
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747 changes: 377 additions & 370 deletions src/ontology/imports/envo_import.owl
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25 changes: 15 additions & 10 deletions src/ontology/imports/exo_import.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/ecto/imports/exo_import.owl>
<http://purl.obolibrary.org/obo/ecto/releases/2023-02-13/imports/exo_import.owl>
<http://purl.obolibrary.org/obo/ecto/releases/2024-01-13/imports/exo_import.owl>
Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/exo/releases/2022-06-29/exo.owl>)
Annotation(owl:versionInfo "2023-02-13"^^xsd:string)
Annotation(owl:versionInfo "2024-01-13")

Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000015>))
Declaration(Class(<http://purl.obolibrary.org/obo/ExO_0000000>))
Expand All @@ -27,11 +27,16 @@ Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/exo#interacts_with_an
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/exo#interacts_with_an_exposure_stressor_via>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000115>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0100001>))
Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/description>))
Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/source>))
Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/title>))
Declaration(AnnotationProperty(<http://purl.org/dc/terms/license>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#created_by>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#creation_date>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#default-namespace>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasDbXref>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#id>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#shorthand>))
Expand Down Expand Up @@ -59,7 +64,7 @@ AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#has

# Object Property: <http://purl.obolibrary.org/obo/BFO_0000050> (<http://purl.obolibrary.org/obo/BFO_0000050>)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:15892874"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/BFO_0000050> "For continuants: C part_of C' if and only if: given any c that instantiates C at a time t, there is some c' such that c' instantiates C' at time t, and c *part_of* c' at t. For processes: P part_of P' if and only if: given any p that instantiates P at a time t, there is some p' such that p' instantiates P' at time t, and p *part_of* p' at t. (Here *part_of* is the instance-level part-relation.)")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:15892874") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/BFO_0000050> "For continuants: C part_of C' if and only if: given any c that instantiates C at a time t, there is some c' such that c' instantiates C' at time t, and c *part_of* c' at t. For processes: P part_of P' if and only if: given any p that instantiates P at a time t, there is some p' such that p' instantiates P' at time t, and p *part_of* p' at t. (Here *part_of* is the instance-level part-relation.)")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/BFO_0000050> "BFO:0000050")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/BFO_0000050> "source")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/BFO_0000050> "part_of")
Expand Down Expand Up @@ -108,7 +113,7 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/BFO_0000015> "pro

# Class: <http://purl.obolibrary.org/obo/ExO_0000000> (exposure stressor)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "CTD:curators"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ExO_0000000> "An agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure_receptor during an exposure event.")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "CTD:curators") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ExO_0000000> "An agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure_receptor during an exposure event.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date> <http://purl.obolibrary.org/obo/ExO_0000000> "2010-09-21T02:43:50Z")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/ExO_0000000> "exposure_stressor")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/ExO_0000000> "ExO:0000000")
Expand All @@ -118,7 +123,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/ExO_0000000> ObjectSomeValuesFrom(<ht

# Class: <http://purl.obolibrary.org/obo/ExO_0000001> (exposure_receptor)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "CTD:curators"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ExO_0000001> "An entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during an exposure event.")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "CTD:curators") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ExO_0000001> "An entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during an exposure event.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/ExO_0000001> "cmattin")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date> <http://purl.obolibrary.org/obo/ExO_0000001> "2010-09-21T02:45:36Z")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/ExO_0000001> "exposure recipient")
Expand All @@ -130,7 +135,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/ExO_0000001> ObjectSomeValuesFrom(<ht

# Class: <http://purl.obolibrary.org/obo/ExO_0000002> (exposure event)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "CTD:curators"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ExO_0000002> "An interaction between an exposure stressor and an exposure_receptor.")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "CTD:curators") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ExO_0000002> "An interaction between an exposure stressor and an exposure_receptor.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/ExO_0000002> "cmattin")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date> <http://purl.obolibrary.org/obo/ExO_0000002> "2010-09-21T02:47:00Z")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/ExO_0000002> "exposure_event")
Expand All @@ -144,7 +149,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/ExO_0000002> ObjectSomeValuesFrom(<ht

# Class: <http://purl.obolibrary.org/obo/ExO_0000055> (route)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "CTD:curators"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ExO_0000055> "The way people or other living organisms come into contact with a stressor.")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "CTD:curators") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ExO_0000055> "The way people or other living organisms come into contact with a stressor.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/ExO_0000055> "cmattin")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date> <http://purl.obolibrary.org/obo/ExO_0000055> "2011-01-10T09:38:37Z")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/ExO_0000055> "exposure_event")
Expand All @@ -154,7 +159,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/ExO_0000055> ObjectSomeValuesFrom(<ht

# Class: <http://purl.obolibrary.org/obo/ExO_0000056> (ingestion)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "CTD:curators"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ExO_0000056> "The process of taking a material (e.g., stressor) into the mouth or body.")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "CTD:curators") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ExO_0000056> "The process of taking a material (e.g., stressor) into the mouth or body.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/ExO_0000056> "cmattin")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date> <http://purl.obolibrary.org/obo/ExO_0000056> "2011-01-10T09:38:47Z")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/ExO_0000056> "route")
Expand All @@ -164,7 +169,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/ExO_0000056> <http://purl.obolibrary.

# Class: <http://purl.obolibrary.org/obo/ExO_0000057> (inhalation)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "CTD:curators"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ExO_0000057> "The process of drawing in by breathing.")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "CTD:curators") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ExO_0000057> "The process of drawing in by breathing.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/ExO_0000057> "cmattin")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date> <http://purl.obolibrary.org/obo/ExO_0000057> "2011-01-10T09:38:59Z")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/ExO_0000057> "route")
Expand All @@ -174,7 +179,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/ExO_0000057> <http://purl.obolibrary.

# Class: <http://purl.obolibrary.org/obo/ExO_0000060> (injection)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GOC:hjd"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ExO_0000060> "A method of putting liquid into the body with a syringe and a hollow needle that punctures the skin.")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GOC:hjd") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ExO_0000060> "A method of putting liquid into the body with a syringe and a hollow needle that punctures the skin.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/ExO_0000060> "cmattin")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date> <http://purl.obolibrary.org/obo/ExO_0000060> "2011-01-10T09:39:37Z")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/ExO_0000060> "route")
Expand Down
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