SHM CSR

Somatic hypermutation and class switch recombination pipeline.
The docker version can be found here.

Dependencies

Name		Name	Last commit message	Last commit date
Latest commit History 32 Commits
baseline		baseline
change_o		change_o
.gitattributes		.gitattributes
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
aa_histogram.r		aa_histogram.r
check_unique_id.r		check_unique_id.r
datatypes_conf.xml		datatypes_conf.xml
gene_identification.py		gene_identification.py
imgt_loader.r		imgt_loader.r
merge.r		merge.r
merge_and_filter.r		merge_and_filter.r
mutation_column_checker.py		mutation_column_checker.py
naive_output.r		naive_output.r
new_imgt.r		new_imgt.r
pattern_plots.r		pattern_plots.r
plot_pdf.r		plot_pdf.r
sequence_overview.r		sequence_overview.r
shm_clonality.htm		shm_clonality.htm
shm_csr.htm		shm_csr.htm
shm_csr.py		shm_csr.py
shm_csr.r		shm_csr.r
shm_csr.xml		shm_csr.xml
shm_downloads.htm		shm_downloads.htm
shm_first.htm		shm_first.htm
shm_frequency.htm		shm_frequency.htm
shm_overview.htm		shm_overview.htm
shm_selection.htm		shm_selection.htm
shm_transition.htm		shm_transition.htm
style.tar.gz		style.tar.gz
subclass_definition.db.nhr		subclass_definition.db.nhr
subclass_definition.db.nin		subclass_definition.db.nin
subclass_definition.db.nsq		subclass_definition.db.nsq
summary_to_fasta.py		summary_to_fasta.py
wrapper.sh		wrapper.sh