Fixed optical duplicate parameter passing in sfm mode.

ExaScience · Aug 19, 2020 · 1712531 · 1712531
1 parent 1a56c00
commit 1712531
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diff --git a/cmd/sfm.go b/cmd/sfm.go
@@ -580,6 +580,8 @@ func Sfm() error {
 			if markOpticalDuplicates != "" {
 				metricsFile := path.Join(metricsDir, fileName)
 				fileFilterArgs = append(fileFilterArgs, []string{"--mark-optical-duplicates-intermediate", metricsFile}...)
+				opticalDuplicatesPixelDistanceString := strconv.FormatInt(int64(opticalDuplicatesPixelDistance), 10)
+				fileFilterArgs = append(fileFilterArgs, []string{"--optical-duplicates-pixel-distance", opticalDuplicatesPixelDistanceString}...)
 			}
 			filterCmd := exec.Command(os.Args[0], fileFilterArgs...)
 			filterCmd.Stderr = os.Stderr

diff --git a/go.mod b/go.mod
@@ -1,5 +1,7 @@
 module github.com/exascience/elprep/v4
 
+go 1.14
+
 require (
 	github.com/exascience/pargo v1.0.1
 	golang.org/x/exp v0.0.0-20190718202018-cfdd5522f6f6 // indirect