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@caherzee caherzee released this 09 Oct 16:08
· 98 commits to master since this release
v3.02
0fa5199

elPrep binaries compiled with Go 1.9.1.

--mark-duplicates now compares reads using the library id instead of just the read group id, matching the behaviour of picard-2.13.2

The spliter/filter/merge scripts have been changed:

  • to be able to handle a directory as input
  • added a --intermediate-files-output-prefix option to specify the name of the intermediate output files generated by the elprep split call
  • to have the default file type of the intermediate output files be derived from the file type of the input (sam/bam/cram)

Optimisation for reducing the memory footprint (where possible).

Many thanks to Geert Vandeweyer for bug reports.

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