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@caherzee caherzee released this 18 Oct 16:13
· 51 commits to master since this release
v4.0.0
5937c9b

elPrep binaries compiled with Go.1.11.1

elPrep 4.0.0 release.

  • added base quality score recalibration (BQSR)
  • added optical duplicate marking
  • added metrics (MultiQC compatible)
  • support for SAM File Format version 1.6
  • support for FASTA and VCF files
  • support for BAM/BGZF files
  • support for elPrep-specific elsites and elfasta formats
  • split/filter/merge (sfm) mode now implemented in Go instead of Python
  • added --log-path option to all tools
  • various API and performance improvements
  • changed license to the GNU Affero General Public License version 3 as published by the Free Software Foundation, with Additional Terms
  • updated demos
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