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elPrep5.1.0 release

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@caherzee caherzee released this 01 Oct 13:05
· 6 commits to master since this release

Binaries can be downloaded here:
https://www.imec-int.com/en/expertise/lifesciences/genomics/dna-sequence-analysis-software

Update to the sfm command:

Added merging of headers when using the sfm command with a directory
containing multiple files as input.

The merging respects the requirements outlined in the SAM spec:

  • order of sequence dictionaries is kept
  • read group identifiers are made unique if needed + optional rg tags of
    reads are updated accordingly
  • program line identifiers are made unique if needed + optional pg tags
    of reads are updated accordingly
  • comment lines are merged
  • the sorting order is set to Unknown

If elprep cannot merge while guaranteeing the above constraints, an
error is produced.