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Templates and atlases that aren't included in Neuroparc and are packaged in C-PAC

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FCP-INDI/C-PAC_templates

C-PAC Templates

In addition to the templates provided by Neuroparc, C-PAC includes the templates here. This repository is modeled after Neuroparc v1.0.

In the package ghcr.io/fcp-indi/c-pac_templates, all templates are stored in a flat structure in the directory /cpac_templates.

Atlas Info Summary

Human

Atlas Name # Regions Symmetrical? Hierarchical? Labelled? Generation Method Average Vol/Region Native coordinate space Description Reference Publication Year of Origin File Source/Download URL License
AAL
ABIDE
CC
CSF
EZ
HarvardOxford
ROIs
Schaefer 200
300
400
1000
https://github.com/ThomasYeoLab/CBIG/tree/v0.22.6-Edit_KRR_LITE_to_only_allow_for_corr_kernel/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI MIT
Smith 10
10 well-matched maps from […] 200-dimensional ICA, Resting-FMRI components […] as shown in PNAS paper
doi:10.1073/pnas.0905267106 2009 https://www.fmrib.ox.ac.uk/datasets/brainmap+rsns/ https://www.fmrib.ox.ac.uk/datasets/brainmap+rsns/PNAS_Smith09_rsn10.nii.gz
Smith desc-thresh3 10 scripts/threshold_mask.py Smith (above) thresholded at Z = 3 as in Fig 1 doi:10.1073/pnas.0905267106 2009
Talairach–Tournoux

Macaque

Atlas Name # Regions Symmetrical? Hierarchical? Labelled? Generation Method Average Vol/Region Native coordinate space Description Reference Publication Year of Origin File Source/Download URL
J_Macaque_11mo_atlas_nACQ 194x252x160 2020 https://github.com/DCAN-Labs/dcan-macaque-pipeline/tree/master/global/templates
MacaqueYerkes19 2020 https://github.com/DCAN-Labs/dcan-macaque-pipeline/tree/master/global/templates

Mouse

Atlas Name # Regions Symmetrical? Hierarchical? Labelled? Generation Method Average Vol/Region Native coordinate space Description Reference Publication Year of Origin File Source/Download URL
CHD8 No No drawn by hand on a BOLD EPI template of one study carried out some time ago at Istituto Italiano di Tecnologia doi:10.1038/s41467-021-26131-z 2021

Technical note about this repository

This repository uses Git Large File Service. You need git lfs to work with this repository directly. If you're just using the templates as containerized, git lfs is not necessary.