0.4.3

What's Changed

• Enhance Accessibility of Nanometa GUI by Enabling External Network Access by @druvus in #68

Full Changelog: 0.4.2...0.4.3

0.4.2

What's Changed

• Added danger color threshold to GUI. by @KristofferSandas in #65
• Enabled editing of headline in GUI. by @KristofferSandas in #66
• Added blast cutoffs to GUI. by @KristofferSandas in #67

Full Changelog: 0.4.1...0.4.2

0.4.1

What's Changed

• Enhancements and Bug Fixes in nanometa_live by @druvus in #61
• Enhanced Time String Parsing and Sorting in QC DataFrame by @druvus in #62
• Refactoring External Database Options and Setup Script Modifications by @druvus in #63

Full Changelog: 0.4.0...0.4.1

0.4.0

What's Changed

• Enhance Data Preparation Workflow by Adding Genome Files Existence Check by @druvus in #53
• Enhanced Logging and New Features by @druvus in #54
• Enhanced Command-line Arguments and Config Update in nanometa_new.py by @druvus in #55
• Make Project Path Argument Required in nanometa_new.py by @druvus in #56
• Refactor Config Loading and Update Tooltip Text in nanometa_gui.py by @druvus in #57
• Added buttons for saving kreport + lists by @KristofferSandas in #58
• Top aligned main tab sections by @KristofferSandas in #59
• Update Project Configuration and Utility Functions by @druvus in #60

Full Changelog: 0.3.1...0.4.0

0.3.1 - Alternative prepare modes

What's Changed

• Refactor BLAST Database Building and Checking by @druvus in #47
• Automatically Create BLAST Database Folders and Refactor Main Script by @druvus in #48
• Enhancements in nanometa-prepare for Improved Usability and Flexibility by @druvus in #49
• Extend Functionality to Handle Local Files Based on Tax IDs by @druvus in #50
• Enhancements to file_utils.py and transform_utils.py to implement mode gtdb-file by @druvus in #51
• bump version to 0.3.1 by @druvus in #52

Full Changelog: 0.3.0...0.3.1

0.3.0 - Comprehensive Refactoring, New Features & Performance Tuning

What's Changed

• Refactoring new and sim plus adding github actions by @druvus in #2
• Refactor backend script by @druvus in #4
• Layout change by @KristofferSandas in #9
• Improve snakemake to use mamba by @druvus in #6
• Single starter script: nanometa-live by @druvus in #8
• Fixing issues with no arguments by @druvus in #13
• Adding fastp parameters by @KristofferSandas in #15
• Basic code cleanup and organizing of nanometa_gui.py. by @KristofferSandas in #16
• Fixed various bugs. Now bug free. by @KristofferSandas in #17
• Made all sankey node colors blue. by @KristofferSandas in #18
• Fixing cirular import by @druvus in #19
• Refactor execute_snakemake function to dynamically generate snakemake_cmd based on configuration settings. by @druvus in #20
• Added filter specifics to gui. by @KristofferSandas in #21
• filter-settings-fix by @KristofferSandas in #22
• Added fastp reports to temp files remove function by @KristofferSandas in #23
• Added info buttons and modals. by @KristofferSandas in #24
• Added more info about blast validation parameters in GUI info. by @KristofferSandas in #25
• Exit script added and working. by @KristofferSandas in #26
• Improvment in nanometa-new and addition of nanometa-prepare by @druvus in #27
• Extend YAML Config Update Functionality to Include species_of_interest by @druvus in #28
• Corrected typo in fastp directory by @KristofferSandas in #29
• Update read_species_from_config to Support Nested Config Format by @druvus in #30
• Updated nanometa_live_env.yaml with all dependencies. by @KristofferSandas in #31
• Update update_yaml_config_with_taxid Function to Support Nested Configurations by @druvus in #32
• Add Termination Logic to fetch_species_data Function for Zero Results or Errors by @druvus in #33
• Enhancements and Bug Fixes for Nanometa Live Pipeline by @druvus in #34
• Refactoring and Feature Enhancement for Improved Workflow Execution and Maintainability by @druvus in #35
• Remove file by @druvus in #36
• Improved Configuration Loading and Error Handling in nanometa_live Backend by @druvus in #37
• Refactoring UI Text and Labels for Clarity in nanometa_gui.py by @druvus in #38
• Fixed two pandas df bugs. by @KristofferSandas in #39
• Added screenshots of new layout. by @KristofferSandas in #40
• Refactor Function Organization into Helper Submodules by @druvus in #41
• Add typing to helper functions by @druvus in #42
• Added cleaning of temporary files into the wrapper script. Also added… by @jaclew in #43
• Renaming live to runner by @druvus in #44
• Define version globally by @druvus in #45
• Optimize timed_senser to Accept Pre-loaded Config by @druvus in #46

New Contributors

• @druvus made their first contribution in #2
• @jaclew made their first contribution in #43

Full Changelog: 0.1.1...0.3.0

Version 0.1.1

Minor updates to make the software compatible with conda installation.

Version 0.1.0

First public release of Nanometa Live