An R/Bioconductor software tool to identify genes associated with latent space interactions in spatial transcriptomics.
If you use the SpaceMarkers software please cite:
Atul Deshpande, Melanie Loth, et al., Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces. bioRxiv 2022. doi:10.1101/2022.06.02.490672
You can install SpaceMarkers directly from the Github source.
install.packages("remotes")
remotes::install_github("FertigLab/SpaceMarkers", dependencies = TRUE, build_vignettes = TRUE)