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davidonlaptop committed Jun 1, 2015
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Expand Up @@ -57,7 +57,10 @@ root@42c257dcfbcc:/#

Once inside the container, run ADAM with 1.5GB of RAM (the `SPARK_DRIVER_MEMORY` and `SPARK_EXECUTOR_MEMORY` variables):
```bash
root@42c257dcfbcc:/# SPARK_DRIVER_MEMORY=1500m SPARK_EXECUTOR_MEMORY=1500m adam-submit transform /data/HG00096.chrom20.ILLUMINA.bwa.GBR.low_coverage.20120522.bam /data/hg00096.chrom20.adam
root@42c257dcfbcc:/# SPARK_DRIVER_MEMORY=1500m SPARK_EXECUTOR_MEMORY=1500m \
adam-submit transform \
/data/HG00096.chrom20.ILLUMINA.bwa.GBR.low_coverage.20120522.bam \
/data/hg00096.chrom20.adam
root@42c257dcfbcc:/#
```

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