Plugins param

package.json

@@ -14,6 +14,7 @@
  "@babel/preset-env": "^7.22.4",
  "@babel/preset-react": "^7.22.3",
  "babel-loader": "^9.1.2",
+ "prettier": "^3.0.3",
  "webpack": "^5.85.0",
  "webpack-cli": "^5.1.1"
  }

srcjs/components/JsonView.jsx

@@ -7,17 +7,39 @@ import { messageShiny } from '../utils'
 
 export default function View(props) {
  const configObject = JSON.parse(props.config)
- const { assembly, tracks, defaultSession, theme, text_index } = configObject
- const location = props.location
- const state = createViewState({
+ const {
  assembly,
  tracks,
  defaultSession,
- location,
- onChange: messageShiny,
- configuration: { theme },
- aggregateTextSearchAdapters: [text_index],
- })
+ theme,
+ text_index,
+ plugins: pluginInput = [],
+ } = configObject
+ const location = props.location
+
+ const [viewState, setViewState] = useState()
+ useEffect(() => {
+ // eslint-disable-next-line @typescript-eslint/no-floating-promises
+ ;(async () => {
+ try {
+ const plugins = await loadPlugins(pluginInput)
+ const state = createViewState({
+ assembly,
+ tracks,
+ defaultSession,
+ location,
+ onChange: messageShiny,
+ configuration: { theme },
+ aggregateTextSearchAdapters: [text_index],
+ plugins: plugins.map(p => p.plugin),
+ })
+ state.session.view.showTrack('segdups_ucsc_hg19')
+ setViewState(state)
+ } catch (e) {
+ setError(e)
+ }
+ })()
+ }, [])
 
- return <JBrowseLinearGenomeView viewState={state} />
+ return <JBrowseLinearGenomeView viewState={viewState} />
 }

yarn.lock

@@ -3442,6 +3442,11 @@ pluralize@^8.0.0:
  resolved "https://registry.yarnpkg.com/pluralize/-/pluralize-8.0.0.tgz#1a6fa16a38d12a1901e0320fa017051c539ce3b1"
  integrity sha512-Nc3IT5yHzflTfbjgqWcCPpo7DaKy4FnpB0l/zCAW0Tc7jxAiuqSxHasntB3D7887LSrA93kDJ9IXovxJYxyLCA==
 
+prettier@^3.0.3:
+ version "3.0.3"
+ resolved "https://registry.yarnpkg.com/prettier/-/prettier-3.0.3.tgz#432a51f7ba422d1469096c0fdc28e235db8f9643"
+ integrity sha512-L/4pUDMxcNa8R/EthV08Zt42WBO4h1rarVtK0K+QJG0X187OLo7l699jWw0GKuwzkPQ//jMFA/8Xm6Fh3J/DAg==
+
 process@^0.11.10:
  version "0.11.10"
  resolved "https://registry.yarnpkg.com/process/-/process-0.11.10.tgz#7332300e840161bda3e69a1d1d91a7d4bc16f182"