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@rbuels rbuels released this 24 Jan 20:59
1.16.7-release
b32a1d3

Minor improvements

  • Add name regularization for refseqs named MtDNA (pull #1408,
    @scottcain, @cmdcolin)

  • Improved performance of startup time with large tracklists (pull #1412,
    @cmdcolin)

  • Improve consistency of scrolling behavior across browsers using
    normalize-wheel npm package (@cmdcolin, @scottcain, pull #1429)

  • Add trackMetadata->sortFacets boolean flag which can be set to false
    to disable sorting the facet categories in the left hand column of the
    faceted track selector. Thanks to Val Wood for championing this issue
    for pombase! (@cmdcolin)

  • Add relativeUrl to trackMetadata config so that URLs relative to the
    data directory can be specified (the standard url config is relative
    to the jbrowse root). Thanks to @loraine-gueguen for the report
    (issue #1457)

Bug fixes

  • Fix bug that has existed since 1.16.0 (since the introduction of @gmod/bam)
    that caused some BAM tags to be missed.

  • Added a fix for a performance regularization for large tracklists that
    contain a lot of data. Thanks to @scottcain for reporting (#pull #1412,
    @cmdcolin)

  • Fixed ability to access remote data directories in desktop app
    (issue #1413)

  • Fixed ability to open FASTA files with the .fasta extension in the
    desktop app. Thanks to @iankorf for reporting (issue #1415, pull #1426,
    @cmdcolin)

  • Fixed generate-names.pl to not overwrite the name store class (@Bjoernsen,
    issue #1297, pull #1423)

  • Fixed some documentation for Content-Range CORs headers and
    renderAlignment configs (@cmdcolin)

  • Fixed rendering of CRAM hard clipping, which would display mismatches
    incorrectly (@cmdcolin, pull #1440, issue #1438)

  • Fixed issue where some BAM features were given the incorrect feature ID
    across blocks (@cmdcolin, GMOD/bam-js#36)

  • Removed monkey patching from the dropdown refseq box, thanks to @lukaw3d
    for finding and fixing (@lukaw3d, pull #1439)

  • Added fix for bigbed files with large headers, e.g. large autoSql schema
    (@cmdcolin)

  • Make VCF based features have distinct file IDs for similar overlapping features
    with same ID, ALT, REF, etc. Thanks @scottcain for the report (@cmdcolin)

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