chore: initialize project

GenomicDataInfrastructure · Mar 27, 2024 · 4448765 · 4448765
1 parent eaac9d3
commit 4448765
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diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -11,12 +11,10 @@ on:
     types:
       - completed
 
-
 env:
   REGISTRY: ghcr.io
-  # TODO Update it to your project name
-  IMAGE_NAME: ghcr.io/genomicdatainfrastructure/oss-project-template
-
+  IMAGE_NAME: ghcr.io/genomicdatainfrastructure/gdi-userportal-dataset-discovery-service
+
 jobs:
   ort:
     strategy:
@@ -30,27 +28,34 @@ jobs:
           fail-on: "issues"
           run: "cache-dependencies,cache-scan-results,labels,analyzer,evaluator,advisor,reporter,upload-results"
 
-# TODO You must review how you deliver you software and adapt the following steps.
   publish-docker-image:
     runs-on: ubuntu-latest
     needs: ort
     permissions:
       contents: read
       packages: write
     steps:
-      - name: Checkout repository
-        uses: actions/checkout@v4
-
       - name: Log in to the Container registry
         uses: docker/login-action@65b78e6e13532edd9afa3aa52ac7964289d1a9c1
         with:
           registry: ${{ env.REGISTRY }}
           username: ${{ github.actor }}
           password: ${{ secrets.GITHUB_TOKEN }}
 
+      - name: Set up GraalVM JDK 21
+        uses: graalvm/setup-graalvm@v1
+        with:
+          java-version: "21"
+
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Build project
+        run: mvn package -Dnative
+
       - name: Extract metadata (tags, labels) for Docker
         id: meta
-        uses: docker/metadata-action@9ec57ed1fcdbf14dcef7dfbe97b2010124a938b7
+        uses: docker/metadata-action@v5
         with:
           images: ${{ env.IMAGE_NAME }}
           tags: |
@@ -62,33 +67,33 @@ jobs:
             type=semver,pattern={{major}},priority=800
             type=sha,priority=1000
 
-      - name: Extract SHA tag
+      - name: Extract last tag
         id: tag
         run: |
           IFS=',' read -ra TAGS <<< "${{ steps.meta.outputs.tags }}"
           LAST_INDEX=$((${#TAGS[@]} - 1))
-          echo "sha_tag=${TAGS[LAST_INDEX]}" >> $GITHUB_OUTPUT
+          echo "last_tag=${TAGS[LAST_INDEX]}" >> $GITHUB_OUTPUT
 
-      - name: Build Docker image for scanning
+      - name: Build Docker image
         uses: docker/build-push-action@v5
         with:
           context: .
           push: false
-          load: true
-          tags: ${{ steps.tag.outputs.sha_tag }}
+          tags: ${{ steps.tag.outputs.last_tag }}
           labels: ${{ steps.meta.outputs.labels }}
+          load: true
 
       - name: Run Trivy vulnerability scanner
         uses: aquasecurity/trivy-action@master
         with:
-          image-ref: "${{ steps.tag.outputs.sha_tag }}"
+          image-ref: "${{ steps.tag.outputs.last_tag }}"
           format: "table"
           exit-code: "1"
           ignore-unfixed: true
           vuln-type: "os,library"
           severity: "CRITICAL,HIGH"
 
-      - name: Build and push Docker image
+      - name: Push Docker image
         uses: docker/build-push-action@v5
         with:
           context: .

diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
@@ -11,9 +11,8 @@ on:
 
 env:
   REGISTRY: ghcr.io
-  # TODO Update it to your project name
-  IMAGE_NAME: ghcr.io/genomicdatainfrastructure/oss-project-template
-
+  IMAGE_NAME: ghcr.io/genomicdatainfrastructure/gdi-userportal-dataset-discovery-service
+
 jobs:
   ort:
     strategy:
@@ -27,27 +26,34 @@ jobs:
           fail-on: "issues"
           run: "cache-dependencies,cache-scan-results,labels,analyzer,evaluator,advisor,reporter,upload-results"
 
-# TODO You must review how you deliver you software and adapt the following steps.
   publish-docker-image:
     runs-on: ubuntu-latest
     needs: ort
     permissions:
       contents: read
       packages: write
     steps:
-      - name: Checkout repository
-        uses: actions/checkout@v4
-
       - name: Log in to the Container registry
         uses: docker/login-action@65b78e6e13532edd9afa3aa52ac7964289d1a9c1
         with:
           registry: ${{ env.REGISTRY }}
           username: ${{ github.actor }}
           password: ${{ secrets.GITHUB_TOKEN }}
 
+      - name: Set up GraalVM JDK 21
+        uses: graalvm/setup-graalvm@v1
+        with:
+          java-version: '21'
+
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Build project
+        run: mvn package -Dnative
+
       - name: Extract metadata (tags, labels) for Docker
         id: meta
-        uses: docker/metadata-action@9ec57ed1fcdbf14dcef7dfbe97b2010124a938b7
+        uses: docker/metadata-action@v5
         with:
           images: ${{ env.IMAGE_NAME }}
           tags: |
@@ -59,25 +65,25 @@ jobs:
             type=semver,pattern={{major}},priority=800
             type=sha,priority=1000
 
-      - name: Extract SHA tag
+      - name: Extract last tag
         id: tag
         run: |
           IFS=',' read -ra TAGS <<< "${{ steps.meta.outputs.tags }}"
           LAST_INDEX=$((${#TAGS[@]} - 1))
-          echo "sha_tag=${TAGS[LAST_INDEX]}" >> $GITHUB_OUTPUT
+          echo "last_tag=${TAGS[LAST_INDEX]}" >> $GITHUB_OUTPUT
 
       - name: Build Docker image for scanning
         uses: docker/build-push-action@v5
         with:
           context: .
           load: true
-          tags: ${{ steps.tag.outputs.sha_tag }}
+          tags: ${{ steps.tag.outputs.last_tag }}
           labels: ${{ steps.meta.outputs.labels }}
 
       - name: Run Trivy vulnerability scanner
         uses: aquasecurity/trivy-action@master
         with:
-          image-ref: "${{ steps.tag.outputs.sha_tag }}"
+          image-ref: "${{ steps.tag.outputs.last_tag }}"
           format: "table"
           exit-code: "1"
           ignore-unfixed: true
@@ -91,3 +97,4 @@ jobs:
           push: true
           tags: ${{ steps.meta.outputs.tags }}
           labels: ${{ steps.meta.outputs.labels }}
+
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -6,13 +6,27 @@ name: Run Tests
 
 on: push
 
-# TODO add here any kind of test you may need
 jobs:
   test:
     runs-on: ubuntu-latest
     permissions:
       contents: read
-      packages: write
+    steps:
+      - uses: actions/checkout@v4
+      - name: Set up GraalVM JDK 21
+        uses: graalvm/setup-graalvm@v1
+        with:
+          java-version: '21'
+      - name: run tests
+        run: mvn --batch-mode --update-snapshots verify formatter:validate
+      - name: run sonar
+        env:
+          SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}
+        run: mvn sonar:sonar -Dsonar.host.url=https://sonarcloud.io -Dsonar.coverage.jacoco.xmlReportPaths=./target/jacoco-report/jacoco.xml -Dsonar.organization=genomicdatainfrastructure -Dsonar.projectKey=GenomicDataInfrastructure_gdi-userportal-dataset-discovery-service
+  reuse:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
     steps:
       - uses: actions/checkout@v4
       - uses: fsfe/reuse-action@v2
diff --git a/.gitignore b/.gitignore
@@ -0,0 +1,49 @@
+# SPDX-FileCopyrightText: 2024 PNED G.I.E.
+#
+# SPDX-License-Identifier: Apache-2.0
+
+#Maven
+target/
+pom.xml.tag
+pom.xml.releaseBackup
+pom.xml.versionsBackup
+release.properties
+.flattened-pom.xml
+
+# Eclipse
+.project
+.classpath
+.settings/
+bin/
+
+# IntelliJ
+.idea
+*.ipr
+*.iml
+*.iws
+
+# NetBeans
+nb-configuration.xml
+
+# Visual Studio Code
+.vscode
+.factorypath
+
+# OSX
+.DS_Store
+
+# Vim
+*.swp
+*.swo
+
+# patch
+*.orig
+*.rej
+
+# Local environment
+.env
+
+# Plugin directory
+/.quarkus/cli/plugins/
+__pycache__/
+venv/