FIX: fix AsaruSim version

bin/AsaruSim.py

@@ -1,11 +1,13 @@
 import argparse
+import version
 from badread_caller import badread_caller, setup_badread_command
 from template_maker import template_maker, setup_template_parameters
 from PCR_amplificator import PCR_amplificator, setup_PCR_parameters
 
 def setup_parent_parser():
     parent_parser = argparse.ArgumentParser(add_help=False)
     parent_parser.add_argument('--debug', action='store_true', help='Enable debug mode')
+    parent_parser.add_argument('--version', action='version', version=version.__version__)
     return parent_parser
 
 

bin/QC.py

@@ -1,6 +1,6 @@
 import pandas as pd
 import argparse
-
+import version
 from QC_tools import qc_generator
 from QC_tools.figs import over_time_graph
 from QC_tools.figs import ATGC_graph
@@ -138,7 +138,9 @@ def main():
              args.conf_params, 
              args.work_params, 
              args.project,
-             args.env)
+             args.env,
+             version.__version__
+             )
 
 
 if __name__ == "__main__":

bin/QC_tools/reporte_maker.py

@@ -33,7 +33,7 @@ def read_logo(image_path):
         encoded_string = base64.b64encode(image_file.read()).decode('utf-8')
     return encoded_string
 
-def reporter(stats_table, pie_fig, Q_over_time, atgc, gc, conf_params, work_params, project, versions):
+def reporter(stats_table, pie_fig, Q_over_time, atgc, gc, conf_params, work_params, project, versions, asarusim_version):
     work_params = string_to_dict(work_params)
     conf_params = list_to_dict(conf_params)
 
@@ -71,7 +71,7 @@ def reporter(stats_table, pie_fig, Q_over_time, atgc, gc, conf_params, work_para
     with doc:
         with header():
             with div():
-                h1('AsaruSim v0.1.0', cls='title')
+                h1('AsaruSim v' + asarusim_version, cls='title')
                 p(current_date, cls='date')
             img_logo = read_logo('asarusim_v2.png')
             img(src=f'data:image/png;base64,{img_logo}',height='60', alt='Logo', style="float: right;")
@@ -157,8 +157,8 @@ def reporter(stats_table, pie_fig, Q_over_time, atgc, gc, conf_params, work_para
 
         with footer():
             with div(style='font-size: 12px; padding: 10px 20px;;'):
-                app_url="https://alihamraoui.github.io/AsaruSim/introduction/"
-                p(raw(f'Generated by <a href="{app_url}">AsaruSim</a> (version 0.2.0)'))
+                app_url="https://genomiqueens.github.io/AsaruSim/introduction/"
+                p(raw(f'Generated by <a href="{app_url}">AsaruSim</a> (v{asarusim_version})'))
 
 
     with doc.body:

bin/version.py

@@ -0,0 +1 @@
+__version__ = '0.2.1'