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GenomiqueENS · Sep 3, 2024 · ad0cf7d · ad0cf7d
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@@ -104,6 +104,15 @@ The human GRCh38 [reference transcriptome](https://ftp.ensembl.org/pub/release-1
                       --gtf dataset/genes.gtf
 ```
 
+##### USING SPARSIM PRESET MATRICES (e.g Chu et al. 10X Genomics datasets)
+
+```bash
+nextflow run main.nf --matrix Chu_param_preset \
+                      --transcriptome datasets/Homo_sapiens.GRCh38.cdna.all.fa \
+                      --features gene_name \
+                      --gtf datasets/Homo_sapiens.GRCh38.112.gtf
+```
+
 ##### WITH PCR AMPLIFICTION
 
 ```bash