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alihamraoui authored Jul 18, 2024
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[![Made with Docker](https://img.shields.io/badge/Made_with-Docker-blue?logo=docker&logoColor=white)](https://www.docker.com/ "Go to Docker homepage")
[![dependency - Nextflow](https://img.shields.io/badge/dependency-Nextflow-green)](https://pkg.go.dev/Nextflow)

[![GitHub tag](https://img.shields.io/github/tag/alihamraoui/AsaruSim?include_prereleases=&sort=semver&color=blue)](https://github.com/alihamraoui/AsaruSim/releases/tag/v1.0)
[![GitHub tag](https://img.shields.io/github/tag/GenomiqueENS/AsaruSim?include_prereleases=&sort=semver&color=blue)](https://github.com/GenomiqueENS/AsaruSim/releases/tag/v1.0)
![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-blue.svg)
[![issues - AsaruSim](https://img.shields.io/github/issues/alihamraoui/AsaruSim)](https://github.com/alihamraoui/AsaruSim/issues)
[![issues - AsaruSim](https://img.shields.io/github/issues/GenomiqueENS/AsaruSim)](https://github.com/GenomiqueENS/AsaruSim/issues)
[![Twitter Follow](https://img.shields.io/twitter/follow/Genomique_ENS.svg?style=social)](https://twitter.com/Genomique_ENS)

# Asaru Sim Documentation

`AsaruSim` is an automated Nextflow workflow designed for simulating 10x single-cell Nanopore reads. It allows to benchmark and optimize single-cell Nanopore long read data processing pipelines.
Full [documentation](https://alihamraoui.github.io/AsaruSim/) is avialable [here](https://alihamraoui.github.io/AsaruSim/).
Full [documentation](https://GenomiqueENS.github.io/AsaruSim/) is avialable [here](https://GenomiqueENS.github.io/AsaruSim/).

<a href="images/asarusim_v2.svg"><img src="images/asarusim_v2.svg" align="middle" height="100" width="290" >
## Prerequisites
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