reorganize sources

GroupeCalcul · Sep 26, 2024 · 856703b · 856703b
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diff --git a/_quarto.yml b/_quarto.yml
@@ -10,13 +10,13 @@ website:
   navbar:
     logo: images/logo.png
     left:
-      - href: index.qmd
+      - href: src/index.qmd
         text: Introduction
-      - href: com_point_a_point.qmd
+      - href: src/com_point_a_point.qmd
         text: Communications point à point
-      - href: com_collectives.qmd
+      - href: src/com_collectives.qmd
         text: Communications collectives
-      - href: exercice.qmd
+      - href: src/exercice.qmd
         text: Conclusion
     tools:
       - icon: github

diff --git a/bcast.R → codes/bcast.R b/bcast.R → codes/bcast.R
diff --git a/demo_pbdmpi.R → codes/demo_pbdmpi.R b/demo_pbdmpi.R → codes/demo_pbdmpi.R
diff --git a/ex_pi_spmd.r → codes/ex_pi_spmd.r b/ex_pi_spmd.r → codes/ex_pi_spmd.r
diff --git a/hello_mpi.F90 → codes/hello_mpi.F90 b/hello_mpi.F90 → codes/hello_mpi.F90
diff --git a/hello_mpi.R → codes/hello_mpi.R b/hello_mpi.R → codes/hello_mpi.R
diff --git a/hello_mpi.c → codes/hello_mpi.c b/hello_mpi.c → codes/hello_mpi.c
diff --git a/hello_mpi.jl → codes/hello_mpi.jl b/hello_mpi.jl → codes/hello_mpi.jl
diff --git a/hello_mpi.py → codes/hello_mpi.py b/hello_mpi.py → codes/hello_mpi.py
diff --git a/hello_mpi.sh → codes/hello_mpi.sh b/hello_mpi.sh → codes/hello_mpi.sh
diff --git a/hello_mpmd.R → codes/hello_mpmd.R b/hello_mpmd.R → codes/hello_mpmd.R
diff --git a/install.R → codes/install.R b/install.R → codes/install.R
diff --git a/loop_rowSums.r → codes/loop_rowSums.r b/loop_rowSums.r → codes/loop_rowSums.r
diff --git a/ping_pong_1.R → codes/ping_pong_1.R b/ping_pong_1.R → codes/ping_pong_1.R
diff --git a/ping_pong_2.R → codes/ping_pong_2.R b/ping_pong_2.R → codes/ping_pong_2.R
diff --git a/ping_pong_3.R → codes/ping_pong_3.R b/ping_pong_3.R → codes/ping_pong_3.R
diff --git a/reduce.R → codes/reduce.R b/reduce.R → codes/reduce.R
diff --git a/rmpi_rowSums.r → codes/rmpi_rowSums.r b/rmpi_rowSums.r → codes/rmpi_rowSums.r
diff --git a/scatter.R → codes/scatter.R b/scatter.R → codes/scatter.R
diff --git a/send_recv.R → codes/send_recv.R b/send_recv.R → codes/send_recv.R
diff --git a/com_collectives.qmd → src/com_collectives.qmd b/com_collectives.qmd → src/com_collectives.qmd
@@ -48,7 +48,7 @@ Il y a trois types de sous-programmes :
 2. Réception de ce message à l’adresse message pour les processus autre que `rank`.
 
 ```R
-{{< include bcast.R >}}
+{{< include ../codes/bcast.R >}}
 ```
 
 ::: {.callout-warning}
@@ -71,7 +71,7 @@ La ième tranche est envoyée au ième processus.
 ![](images/broadcastvsscatter.png)
 
 ```R
-{{< include scatter.R >}}
+{{< include ../codes/scatter.R >}}
 ```
 
 ```bash
@@ -126,7 +126,7 @@ Opérations pour réductions réparties
  - "minloc" : Recherche de l’indice du minimum
 
 ```R
-{{< include reduce.R >}}
+{{< include ../codes/reduce.R >}}
 ```
 
 ```bash

diff --git a/com_point_a_point.qmd → src/com_point_a_point.qmd b/com_point_a_point.qmd → src/com_point_a_point.qmd
@@ -42,7 +42,7 @@ Il existe des versions non bloquantes `mpi.isend` et `mpi.irecv` ainsi qu'une ve
 ## Exemple 
 
 ```R
-{{< include send_recv.R >}}
+{{< include ../codes/send_recv.R >}}
 ```
 
 ```bash
@@ -69,13 +69,13 @@ rang 1 renvoie le message vers le processus de rang 0.
 ## Solutions
 
 ```r 
-{{< include corrections/ping_pong_1.R >}}
+{{< include ../corrections/ping_pong_1.R >}}
 ```
 
 ```r 
-{{< include corrections/ping_pong_2.R >}}
+{{< include ../corrections/ping_pong_2.R >}}
 ```
 
 ```r 
-{{< include corrections/ping_pong_3.R >}}
+{{< include ../corrections/ping_pong_3.R >}}
 ```
diff --git a/exercice.qmd → src/exercice.qmd b/exercice.qmd → src/exercice.qmd
@@ -21,7 +21,7 @@ format:
 Dans cet exemple, on crée autant de vecteurs que de processus initialisés à la valeur du rang. Ces vecteurs sont collectés dans une matrice construite par colonnes.
 
 ```R
-{{< include demo_pbdmpi.R >}}
+{{< include ../codes/demo_pbdmpi.R >}}
 ```
 
 ```bash
@@ -63,7 +63,7 @@ COMM.RANK = 0
 On veut paralléliser l'exemple suivant avec Rmpi que j'ai trouvé [ici](https://snoweye.github.io/R_note/inc_menu/Rmpi.html)
 
 ```R
-{{< include loop_rowSums.r >}}
+{{< include ../codes/loop_rowSums.r >}}
 ```
 
 Voici la version MPMD venant de la même source, essayer d'en faire une version SPMD et comparer les performances.
@@ -72,11 +72,11 @@ Voici la version MPMD venant de la même source, essayer d'en faire une version
 - Votre code est-il plus conçis ?
 
 ```R
-{{< include rmpi_rowSums.r >}}
+{{< include ../codes/rmpi_rowSums.r >}}
 ```
 
 ## Solution
 
 ```r 
-{{< include corrections/rowsum.R >}}
+{{< include ../corrections/rowsum.R >}}
 ```
diff --git a/images/allgather.png → src/images/allgather.png b/images/allgather.png → src/images/allgather.png
diff --git a/images/barrier.png → src/images/barrier.png b/images/barrier.png → src/images/barrier.png
diff --git a/images/broadcastvsscatter.png → src/images/broadcastvsscatter.png b/images/broadcastvsscatter.png → src/images/broadcastvsscatter.png
diff --git a/images/gather.png → src/images/gather.png b/images/gather.png → src/images/gather.png
diff --git a/images/logo.png → src/images/logo.png b/images/logo.png → src/images/logo.png
diff --git a/images/mpi_reduce_1.png → src/images/mpi_reduce_1.png b/images/mpi_reduce_1.png → src/images/mpi_reduce_1.png
diff --git a/images/mpi_reduce_2.png → src/images/mpi_reduce_2.png b/images/mpi_reduce_2.png → src/images/mpi_reduce_2.png
diff --git a/images/mpmd.png → src/images/mpmd.png b/images/mpmd.png → src/images/mpmd.png
diff --git a/images/spmd.png → src/images/spmd.png b/images/spmd.png → src/images/spmd.png
diff --git a/index.qmd → src/index.qmd b/index.qmd → src/index.qmd
@@ -80,7 +80,7 @@ Bibliothèques scientifiques parallèles
 Cloner le dépôt <https://github.com/GroupeCalcul/ANFRCalculRmpi> pour récupérer les exemples.
 
 ```c 
-{{< include hello_mpi.c >}}
+{{< include ../codes/hello_mpi.c >}}
 ```
 
 ## Compilation et exécution d’un code MPI en C 
@@ -114,7 +114,7 @@ Pour les langages interprétés, il est nécessaire de lancer plusieurs sessions
 pour utiliser MPI.
 
 ```python
-{{< include hello_mpi.py >}}
+{{< include ../codes/hello_mpi.py >}}
 ```
 
 ```bash
@@ -130,7 +130,7 @@ Hello, World! I am process 0 of 4 on ar039133.math.univ-rennes1.fr
 ![](images/spmd.png)
 
 ```R
-{{< include hello_mpi.R >}}
+{{< include ../codes/hello_mpi.R >}}
 ```
 ::: {.callout-note}
 Pour une raison qui m'est inconnue, si on laisse la valeur `comm=1` par défaut, l'exemple ne fonctionne pas.
@@ -165,7 +165,7 @@ cd ANFRCalculRmpi
 fichier `hello_mpi.sh` nécessaire à l'utilisation d'[OAR](https://oar.imag.fr)
 
 ```bash
-{{< include hello_mpi.sh >}}
+{{< include ../codes/hello_mpi.sh >}}
 ```
 
 Ce script doit être exécutable
@@ -217,7 +217,7 @@ Hello world from task 001 of 004, on host dahu146
 ![](images/mpmd.png)
 
 ```R
-{{< include hello_mpmd.R >}}
+{{< include ../codes/hello_mpmd.R >}}
 ```
 
 ```bash