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@HCGB-IGTP

High Content Genomics & Bioinformatics - Germans Trias i Pujol Research Institute

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  1. XICRA XICRA Public

    Small RNAseq pipeline for paired-end reads

    Python 7 3

  2. spaTyper spaTyper Public

    Forked from mjsull/spa_typing

    Computational method for finding spa types.

    Python 6 2

  3. BacterialTyper BacterialTyper Public

    Bacterial identification pipeline

    Python 4

  4. islandpath islandpath Public

    Forked from brinkmanlab/islandpath

    IslandPath standalone software

    Perl 1

  5. pyan pyan Public

    Forked from ttylec/pyan

    pyan is a Python module that performs static analysis of Python code to determine a call dependency graph between functions and methods. This is different from running the code and seeing which fun…

    Python 1

  6. HCVgenotool HCVgenotool Public

    Genotyping tool to assess HCV genetic diversity (genotype and subtype) from NGS data.

    Python 1 1

Repositories

Showing 10 of 12 repositories
  • wanderer_v2 Public
    HCGB-IGTP/wanderer_v2’s past year of commit activity
    Shell 0 0 0 0 Updated Jun 11, 2024
  • HCGB_python_functions Public

    useful python functions

    HCGB-IGTP/HCGB_python_functions’s past year of commit activity
    Python 0 0 0 0 Updated Jun 11, 2024
  • XICRA.stats Public

    R package for descriptive statistics of XICRA output results

    HCGB-IGTP/XICRA.stats’s past year of commit activity
    HTML 0 GPL-3.0 0 1 0 Updated Jun 11, 2024
  • HCGB.IGTP.DAnalysis Public

    Differential expression/methylation analysis for several platform and techniques

    HCGB-IGTP/HCGB.IGTP.DAnalysis’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Apr 16, 2024
  • BacterialTyper Public

    Bacterial identification pipeline

    HCGB-IGTP/BacterialTyper’s past year of commit activity
    Python 4 MIT 0 12 3 Updated Apr 3, 2024
  • XICRA Public

    Small RNAseq pipeline for paired-end reads

    HCGB-IGTP/XICRA’s past year of commit activity
    Python 7 MIT 3 8 0 Updated Feb 23, 2024
  • RNA_seq_pipe Public
    HCGB-IGTP/RNA_seq_pipe’s past year of commit activity
    Python 1 1 0 0 Updated Aug 24, 2023
  • HCVgenotool Public

    Genotyping tool to assess HCV genetic diversity (genotype and subtype) from NGS data.

    HCGB-IGTP/HCVgenotool’s past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Oct 7, 2021
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    HCGB-IGTP/bioconda-recipes’s past year of commit activity
    Shell 0 3,180 0 0 Updated May 18, 2021
  • spaTyper Public Forked from mjsull/spa_typing

    Computational method for finding spa types.

    HCGB-IGTP/spaTyper’s past year of commit activity
    Python 6 LGPL-3.0 4 0 0 Updated Mar 23, 2021
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