Added ability to call scripts etc within the submit file

The user can set the following parameter within the job configuration
files

script = source this script, this, dont forget this 1

and the following will appear in the submit file

source this script
this
dont forget this 1

Longbow/corelibs/configuration.py

@@ -92,6 +92,7 @@
     "modules": "",
     "maxtime": "24:00",
     "memory": "",
+    "scripts": "",
     "sge-peflag": "mpi",
     "sge-peoverride": "false",
     "port": "22",

Longbow/plugins/schedulers/lsf.py

@@ -120,6 +120,17 @@ def prepare(job):
 
     jobfile.write("#BSUB -n " + job["cores"] + "\n")
 
+    # Load any custom scripts.
+    if job["scripts"] != "":
+
+        scripts = job["scripts"].split(',')
+
+        if len(scripts) > 1:
+
+            for item in scripts:
+
+                jobfile.write(item.strip() + "\n\n")
+
     if job["modules"] is not "":
 
         for module in job["modules"].split(","):

Longbow/plugins/schedulers/pbs.py

@@ -167,6 +167,17 @@ def prepare(job):
         "cd $PBS_O_WORKDIR\n"
         "export OMP_NUM_THREADS=1\n\n")
 
+    # Load any custom scripts.
+    if job["scripts"] != "":
+
+        scripts = job["scripts"].split(',')
+
+        if len(scripts) > 1:
+
+            for item in scripts:
+
+                jobfile.write(item.strip() + "\n\n")
+
     # Load up modules if required.
     if job["modules"] is not "":
 

Longbow/plugins/schedulers/sge.py

@@ -118,6 +118,18 @@ def prepare(job):
         jobfile.write("#$ -pe " + job["sge-peflag"] + " " +
                       job["cores"] + "\n\n")
 
+    # Load any custom scripts.
+    if job["scripts"] != "":
+
+        scripts = job["scripts"].split(',')
+
+        if len(scripts) > 1:
+
+            for item in scripts:
+
+                jobfile.write(item.strip() + "\n\n")
+
+    # Add in module to be loaded.
     if job["modules"] is not "":
 
         for module in job["modules"].split(","):

Longbow/plugins/schedulers/slurm.py

@@ -125,6 +125,17 @@ def prepare(job):
     # Walltime for job
     jobfile.write("#SBATCH -t " + job["maxtime"] + ":00\n\n")
 
+    # Load any custom scripts.
+    if job["scripts"] != "":
+
+        scripts = job["scripts"].split(',')
+
+        if len(scripts) > 1:
+
+            for item in scripts:
+
+                jobfile.write(item.strip() + "\n\n")
+
     # Load up modules if required.
     if job["modules"] is not "":
 

Longbow/plugins/schedulers/soge.py

@@ -143,6 +143,17 @@ def prepare(job):
 
     jobfile.write("#$ -pe ib " + cores + "\n\n")
 
+    # Load any custom scripts.
+    if job["scripts"] != "":
+
+        scripts = job["scripts"].split(',')
+
+        if len(scripts) > 1:
+
+            for item in scripts:
+
+                jobfile.write(item.strip() + "\n\n")
+
     if job["modules"] is not "":
 
         for module in job["modules"].split(","):