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25 Open 34 Closed
25 Open 34 Closed
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Issues list

Remediate High io.netty:netty-all vulnerability
#112 opened Apr 30, 2020 by Lilalamar
@chmreid
Remediate High xercesImpl vulnerability
#111 opened Feb 10, 2020 by Lilalamar Q1 2020 Milestone 2
@NoopDog
Remediate High hadoop vulnerability
#110 opened Feb 10, 2020 by Lilalamar Q1 2020 Milestone 2
@NoopDog
Remediate High Jackson vulnerability
#109 opened Jan 28, 2020 by Lilalamar Q1 2020 Milestone 2
@NoopDog
Add ability to launch each vignette notebook on MyBinder.org
#99 opened Dec 19, 2019 by chmreid
@chmreid
1
Add Sphinx Makefile and pin Sphinx version in requirements-docs.txt
#98 opened Dec 19, 2019 by chmreid
@chmreid
Convert SPARK example from Markdown to Jupyter notebook
#96 opened Dec 19, 2019 by chmreid
Use cell-by-gene matrix files, not metadata, to count cells of a given type
#95 opened Dec 19, 2019 by chmreid Q1 2020 Milestone 1
1
Copyedit notebooks to improve explanations and be more formal/less colloquial
#94 opened Dec 19, 2019 by chmreid Q1 2020 Milestone 1
@chmreid
Fix multiple issues with notebooks completing execution
#93 opened Dec 19, 2019 by chmreid Q4 2019 Milestone 3
@chmreid
Notebook tests are hanging
#91 opened Dec 18, 2019 by chmreid
1
Test against Python 3.8
#88 opened Dec 17, 2019 by natanlao
Fix directory and notebook names to eliminate spaces
#86 opened Dec 17, 2019 by chmreid Q1 2020 Milestone 1
1
@chmreid
[EPIC] Use nbsphinx to integrate Jupyter notebooks with Sphinx documentation Epic
#76 opened Dec 12, 2019 by chmreid Q1 2020 Milestone 1
@chmreid
Missing quickstart instructions
#75 opened Dec 4, 2019 by chmreid
@chmreid
ElasticSearch fields are opaque to consumers
#68 opened Sep 18, 2019 by natanlao
1
Notebooks need consistent dependency install process
#59 opened Aug 22, 2019 by natanlao
2
Create a vignette for finding all projects updated after date X
#73 opened Jun 19, 2019 by kozbo
1
Make vignette exploring HCA expression matrix with seurat
#26 opened Dec 4, 2018 by GenevieveHaliburton
@GenevieveHaliburton
Discover novel liver cell types by cross-referencing HCA single cells with known datasets
#17 opened Jul 26, 2018 by jnkrupp
Identify most differentially expressed genes between t-cells and monocytes
#16 opened Jul 26, 2018 by jnkrupp
Find most variable genes in monocytes across experiments
#15 opened Jul 26, 2018 by jnkrupp
Compare averaged gene expression of neurons to bulk controls
#14 opened Jul 26, 2018 by jnkrupp
Check gene expression of key markers for immune cells
#13 opened Jul 26, 2018 by jnkrupp
Compare QC metrics between one experiment and another
#12 opened Jul 26, 2018 by jnkrupp
2
ProTip! Updated in the last three days: updated:>2024-12-22.