Fix nested flowsheet time domain construction #7197
Workflow file for this run
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| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - '*_rel' | |
| schedule: | |
| # run daily at 5:00 am UTC (12 am ET/9 pm PT) | |
| - cron: '0 5 * * *' | |
| repository_dispatch: | |
| # to run this, send a POST API call at repos/IDAES/idaes-pse/dispatches with the specified event_type | |
| # e.g. `gh repos/IDAES/idaes-pse/dispatches -F event_type=ci_run_tests` | |
| types: [ci_run_tests] | |
| workflow_dispatch: | |
| inputs: | |
| git-ref: | |
| description: Git hash (optional) | |
| required: false | |
| pull_request: | |
| types: | |
| - opened | |
| # ready_for_review occurs when a draft PR is turned to non-draft | |
| - ready_for_review | |
| # synchronize occurs whenever commits are pushed to the PR branch | |
| - synchronize | |
| concurrency: | |
| # NOTE: the value of `group` should be chosen carefully, | |
| # otherwise we might end up over- or under-canceling workflow runs | |
| # e.g. if we want to have Codecov results for each commit on `main`, | |
| # we should use something `github.sha` instead of `github.ref_name` | |
| # to avoid over-canceling runs from `main` | |
| # in which case we'd need to access the PR number from somewhere else rather than `github.ref_name` | |
| # to avoid under-canceling runs from PRs | |
| group: ${{ github.workflow }}-${{ github.ref_name }} | |
| cancel-in-progress: true | |
| env: | |
| # default Python version to use for checks that do not require multiple versions | |
| DEFAULT_PYTHON_VERSION: '3.10' | |
| IDAES_CONDA_ENV_NAME_DEV: idaes-pse-dev | |
| PYTEST_ADDOPTS: "--color=yes" | |
| defaults: | |
| run: | |
| # -l: login shell, needed when using Conda run: | |
| shell: bash -l {0} | |
| jobs: | |
| code-formatting: | |
| name: Check code formatting (Black) | |
| # OS and/or Python version don't make a difference, so we choose ubuntu and 3.10 for performance | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.DEFAULT_PYTHON_VERSION }} | |
| - name: Install Black | |
| # unlike the other jobs, we don't need to install IDAES and/or all the dev dependencies, | |
| # but we still want to specify the Black version to use in requirements-dev.txt for local development | |
| # so we extract the relevant line and pass it to a simple `pip install` | |
| run: | | |
| # we store the version | |
| black_requirement="$(grep 'black==' requirements-dev.txt)" | |
| pip --no-cache-dir install --progress-bar off "$black_requirement" | |
| - name: Run Black to verify that the committed code is formatted | |
| run: | | |
| black --check . | |
| spell-check: | |
| name: Check Spelling | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Run Spell Checker | |
| uses: crate-ci/typos@v1.24.5 | |
| with: | |
| config: ./.github/workflows/typos.toml | |
| pytest: | |
| # description: Run pytest with dev dependencies | |
| name: pytest (py${{ matrix.python-version }}/${{ matrix.os }}) | |
| runs-on: ${{ matrix.runner-image }} | |
| needs: [code-formatting, spell-check] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11', '3.12'] | |
| os: | |
| - linux | |
| - win64 | |
| include: | |
| - os: linux | |
| runner-image: ubuntu-20.04 | |
| - os: win64 | |
| runner-image: windows-2022 | |
| - python-version: '3.11' | |
| # only generate coverage report for a single python version in the matrix | |
| # to avoid overloading Codecov | |
| cov-report: true | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/display-debug-info | |
| - name: Set up Conda environment | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: ${{ env.IDAES_CONDA_ENV_NAME_DEV }} | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up idaes | |
| uses: ./.github/actions/setup-idaes | |
| with: | |
| install-target: -r requirements-dev.txt | |
| - name: Add pytest CLI options for coverage | |
| if: matrix.cov-report | |
| run: | | |
| echo PYTEST_ADDOPTS="$PYTEST_ADDOPTS --cov --cov-report=xml" >> "$GITHUB_ENV" | |
| - name: Run pytest (not integration) | |
| run: | | |
| pytest --pyargs idaes -m "not integration" | |
| - name: Upload coverage report as GHA workflow artifact | |
| if: matrix.cov-report | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-report-${{ matrix.os }} | |
| path: coverage.xml | |
| if-no-files-found: error | |
| upload-coverage: | |
| name: Upload coverage report (Codecov) | |
| needs: [pytest] | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| report-variant: ["linux", "win64"] | |
| steps: | |
| # the checkout step is needed to have access to codecov.yml | |
| - uses: actions/checkout@v4 | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: coverage-report-${{ matrix.report-variant }} | |
| - name: Upload coverage report to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| fail_ci_if_error: true | |
| verbose: true | |
| # NOTE: secrets are not available for pull_request workflows | |
| # However, as of 2024-02-10, Codecov is still allowing tokenless upload from PRs | |
| # but does require token for other workflows e.g. merge to `main` | |
| # see https://github.com/codecov/codecov-action/issues/1274#issuecomment-1934437359 | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| # pinning version after v0.7.0 broke tokenless upload | |
| # see codecov/codecov-action#1487 | |
| version: v0.7.1 | |
| build-docs: | |
| name: Build Sphinx docs | |
| runs-on: ubuntu-latest | |
| needs: [code-formatting, spell-check] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Conda environment | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: ${{ env.IDAES_CONDA_ENV_NAME_DEV }} | |
| python-version: ${{ env.DEFAULT_PYTHON_VERSION }} | |
| - name: Set up idaes | |
| uses: ./.github/actions/setup-idaes | |
| with: | |
| install-target: -r requirements-dev.txt | |
| - name: Build Sphinx docs | |
| run: | | |
| which python | |
| cd docs/ | |
| python build.py --timeout 600 | |
| - name: Publish built docs | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: idaes-pse-docs-html | |
| path: docs/build/html/ | |
| retention-days: 7 | |
| pylint: | |
| name: Pylint | |
| runs-on: ubuntu-latest | |
| needs: [code-formatting, spell-check] | |
| env: | |
| pylint_target_dir: idaes/ | |
| pylint_output_path: pylint.json | |
| pylint_todo_sentinel: PYLINT-TODO | |
| steps: | |
| - uses: actions/checkout@v4 | |
| # NOTE: using Conda instead of actions/setup-python in this job is not strictly necessary | |
| # as it doesn't need to run on Windows or use the setup-idaes local action, | |
| # but we do it for consistency with the other jobs | |
| - name: Set up Conda environment | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: ${{ env.IDAES_CONDA_ENV_NAME_DEV }} | |
| python-version: ${{ env.DEFAULT_PYTHON_VERSION }} | |
| - name: Set up idaes | |
| uses: ./.github/actions/setup-idaes | |
| with: | |
| install-target: -r requirements-dev.txt | |
| - name: Run pylint | |
| run: | | |
| echo "::group::Display pylint version" | |
| pip show pylint astroid | |
| echo "::endgroup::" | |
| pylint --rcfile=./.pylint/pylintrc --disable=R --output-format=idaes_reporters.DisplayProgress,colorized,idaes_reporters.GHACheckAnnotations:pylint.txt "$pylint_target_dir" | |
| - name: Generate GHA Check Annotations from Pylint report | |
| if: success() || failure() | |
| run: | | |
| cat pylint.txt || echo "GHA-compatible Pylint report not found" | |
| - name: Show PYLINT-TODO comments left in the codebase | |
| if: always() | |
| run: | | |
| # use a bash array to save options containing quotes to a variable, then use the double-quoted array expansion "${arr[@]}" | |
| grep_opts=( --recursive --include '*.py' --color=always --after-context=2 --line-number --initial-tab ) | |
| grep "$pylint_todo_sentinel" "${grep_opts[@]}" "$pylint_target_dir" || echo "No \"$pylint_todo_sentinel\" comments found in $pylint_target_dir" | |
| compat: | |
| name: Compatibility tests | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Conda environment | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: ${{ env.IDAES_CONDA_ENV_NAME_DEV }} | |
| python-version: ${{ env.DEFAULT_PYTHON_VERSION }} | |
| - name: Set up idaes | |
| uses: ./.github/actions/setup-idaes | |
| with: | |
| install-target: -r requirements-dev.txt | |
| - name: Create empty pytest.ini file | |
| run: | | |
| echo "" > pytest.ini | |
| - name: Install and run compatibility tests | |
| run: | | |
| pip install "git+https://github.com/IDAES/idaes-compatibility@0.23.8" | |
| pytest --pyargs idaes_compatibility |