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keeping sql collation consistent with main
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@adkinsrs
adkinsrs committed Dec 6, 2023
1 parent c4b9922 commit 3c35a0f
Showing 1 changed file with 31 additions and 31 deletions.
62 changes: 31 additions & 31 deletions create_schema.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ CREATE TABLE guser (
help_id VARCHAR(50),
date_created DATETIME DEFAULT CURRENT_TIMESTAMP,
is_gear_curator TINYINT(1) DEFAULT 0
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

-- password is a hashlib md5 hexdigest
INSERT INTO guser (id, user_name, email, institution, pass, updates_wanted, is_admin)
Expand All @@ -25,15 +25,15 @@ CREATE TABLE ggroup (
creator_id INT NOT NULL,
label VARCHAR(255) NOT NULL,
FOREIGN KEY (creator_id) REFERENCES guser(id) ON DELETE CASCADE
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE user_group_membership (
id INT PRIMARY KEY AUTO_INCREMENT,
user_id INT NOT NULL,
group_id INT NOT NULL,
FOREIGN KEY (user_id) REFERENCES guser(id) ON DELETE CASCADE,
FOREIGN KEY (group_id) REFERENCES ggroup(id) ON DELETE CASCADE
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE user_session (
id INT PRIMARY KEY AUTO_INCREMENT,
Expand All @@ -42,7 +42,7 @@ CREATE TABLE user_session (
FOREIGN KEY (user_id)
REFERENCES guser(id)
ON DELETE CASCADE
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE organism (
id INT PRIMARY KEY AUTO_INCREMENT,
Expand All @@ -51,7 +51,7 @@ CREATE TABLE organism (
species VARCHAR(255),
strain VARCHAR(255),
taxon_id INT
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

-- DO NOT change these values without making corresponding changes in the annotation loading scripts
INSERT INTO organism (id, label, genus, species, strain, taxon_id)
Expand Down Expand Up @@ -87,7 +87,7 @@ CREATE TABLE gene (
INDEX gene_sym (gene_symbol),
FOREIGN KEY (organism_id) REFERENCES organism(id)
ON DELETE CASCADE
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE gene_cart (
id INT PRIMARY KEY AUTO_INCREMENT,
Expand All @@ -104,7 +104,7 @@ CREATE TABLE gene_cart (
-- INDEX share_id (share_id),
FOREIGN KEY (user_id) REFERENCES guser(id) ON DELETE CASCADE,
FOREIGN KEY (organism_id) REFERENCES organism(id) ON DELETE CASCADE
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE gene_cart_member (
id INT PRIMARY KEY AUTO_INCREMENT,
Expand All @@ -113,15 +113,15 @@ CREATE TABLE gene_cart_member (
FOREIGN KEY (gene_cart_id)
REFERENCES gene_cart(id)
ON DELETE CASCADE
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE gene_cart_group_membership (
id INT PRIMARY KEY AUTO_INCREMENT,
gene_cart_id INT NOT NULL,
group_id INT NOT NULL,
FOREIGN KEY (gene_cart_id) REFERENCES gene_cart(id) ON DELETE CASCADE,
FOREIGN KEY (group_id) REFERENCES ggroup(id) ON DELETE CASCADE
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE gene_symbol (
id INT PRIMARY KEY AUTO_INCREMENT,
Expand All @@ -130,7 +130,7 @@ CREATE TABLE gene_symbol (
is_primary TINYINT(1) DEFAULT 0,
INDEX gene_symbol_label_idx (label),
FOREIGN KEY (gene_id) REFERENCES gene(id)
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;
CREATE INDEX idx_gene_symbol__gene_id ON gene_symbol (gene_id);
CREATE INDEX idx_gene_symbol__label ON gene_symbol (label);

Expand All @@ -139,23 +139,23 @@ CREATE TABLE go (
name VARCHAR(255) NOT NULL,
namespace VARCHAR(30) NOT NULL,
def TEXT
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE gene_go_link (
id INT UNIQUE KEY AUTO_INCREMENT,
gene_id INT NOT NULL,
go_id VARCHAR(20) NOT NULL,
PRIMARY KEY (gene_id, go_id),
FOREIGN KEY (gene_id) REFERENCES gene(id)
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE gene_dbxref (
id INT UNIQUE KEY AUTO_INCREMENT,
gene_id INT NOT NULL,
dbxref VARCHAR(100) NOT NULL,
PRIMARY KEY (gene_id, dbxref),
FOREIGN KEY (gene_id) REFERENCES gene(id)
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE mirna_family (
id INT PRIMARY KEY AUTO_INCREMENT,
Expand All @@ -165,7 +165,7 @@ CREATE TABLE mirna_family (
family_label VARCHAR(20),
FOREIGN KEY (stem_loop_id) REFERENCES gene(id),
FOREIGN KEY (mature_id) REFERENCES gene(id)
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE anatomy (
id INT PRIMARY KEY AUTO_INCREMENT,
Expand All @@ -178,7 +178,7 @@ CREATE TABLE anatomy (
FOREIGN KEY (organism_id)
REFERENCES organism(id)
ON DELETE CASCADE
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE dataset (
id VARCHAR(50) PRIMARY KEY,
Expand Down Expand Up @@ -218,7 +218,7 @@ CREATE TABLE dataset (
FOREIGN KEY (organism_id)
REFERENCES organism(id)
ON DELETE CASCADE
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE dataset_display (
id INT PRIMARY KEY AUTO_INCREMENT,
Expand All @@ -235,7 +235,7 @@ CREATE TABLE dataset_display (
REFERENCES guser(id)
ON DELETE CASCADE,
INDEX user_dataset (user_id, dataset_id)
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE dataset_preference (
user_id INT NOT NULL,
Expand All @@ -253,7 +253,7 @@ CREATE TABLE dataset_preference (
FOREIGN KEY (display_id)
REFERENCES dataset_display(id)
ON DELETE CASCADE
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

-- Stores custom external URLs to be displayed with each dataset
CREATE TABLE dataset_link (
Expand All @@ -275,7 +275,7 @@ CREATE TABLE dataset_shares (
FOREIGN KEY (user_id)
REFERENCES guser(id)
ON DELETE CASCADE
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE event (
id INT PRIMARY KEY AUTO_INCREMENT,
Expand Down Expand Up @@ -310,7 +310,7 @@ CREATE TABLE folder (
parent_id INT,
label VARCHAR(100) NOT NULL,
FOREIGN KEY (parent_id) REFERENCES folder(id) ON DELETE CASCADE
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

-- The label for this one is not actually displayed. It is set in tree.js
INSERT INTO folder (id, parent_id, label) VALUES (101, NULL, 'Highlighted profiles');
Expand All @@ -331,7 +331,7 @@ CREATE TABLE folder_member (
item_type VARCHAR(20) NOT NULL, -- options: 'layout', 'genecart'
FOREIGN KEY (folder_id) REFERENCES folder(id) ON DELETE CASCADE,
UNIQUE KEY uk_folder_item (folder_id, item_id, item_type)
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE layout (
id INT PRIMARY KEY AUTO_INCREMENT,
Expand All @@ -344,7 +344,7 @@ CREATE TABLE layout (
FOREIGN KEY (user_id)
REFERENCES guser(id)
ON DELETE CASCADE
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;
INSERT INTO layout VALUES (0, 0, NULL, "Hearing (default)", 1);
INSERT INTO layout VALUES (10000, 0, NULL, "Brain development (default)", 0);
INSERT INTO layout VALUES (10001, 0, NULL, "Huntingtons disease (default)", 0);
Expand All @@ -364,15 +364,15 @@ CREATE TABLE layout_members (
FOREIGN KEY (dataset_id)
REFERENCES dataset(id)
ON DELETE CASCADE
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE layout_group_membership (
id INT PRIMARY KEY AUTO_INCREMENT,
layout_id INT NOT NULL,
group_id INT NOT NULL,
FOREIGN KEY (layout_id) REFERENCES layout(id) ON DELETE CASCADE,
FOREIGN KEY (group_id) REFERENCES ggroup(id) ON DELETE CASCADE
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE supplemental_images (
id INT PRIMARY KEY AUTO_INCREMENT,
Expand All @@ -382,12 +382,12 @@ CREATE TABLE supplemental_images (
gene_symbol VARCHAR(20),
image_url VARCHAR(200),
index gene_sym_idx(gene_symbol)
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE tag (
id INT PRIMARY KEY AUTO_INCREMENT,
label VARCHAR(55)
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

-- multiple tags to multiple comments
CREATE TABLE comment_tag (
Expand All @@ -398,7 +398,7 @@ CREATE TABLE comment_tag (
FOREIGN KEY (comment_id)
REFERENCES comment(id)
ON DELETE CASCADE
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE dataset_tag (
id INT PRIMARY KEY AUTO_INCREMENT,
Expand All @@ -409,7 +409,7 @@ CREATE TABLE dataset_tag (
FOREIGN KEY (dataset_id)
REFERENCES dataset(id)
ON DELETE CASCADE
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE note (
id INT PRIMARY KEY AUTO_INCREMENT,
Expand All @@ -424,7 +424,7 @@ CREATE TABLE note (
REFERENCES guser(id),
FOREIGN KEY (dataset_id)
REFERENCES dataset(id)
) ENGINE=INNODB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=INNODB;

CREATE TABLE `dataset_epiviz` (
`id` varchar(50) NOT NULL,
Expand All @@ -437,7 +437,7 @@ CREATE TABLE `dataset_epiviz` (
`description` text,
`share_id` varchar(50) NOT NULL,
`organism` varchar(100) DEFAULT NULL
) ENGINE=InnoDB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=InnoDB;

CREATE TABLE user_history (
id INT PRIMARY KEY AUTO_INCREMENT,
Expand All @@ -448,4 +448,4 @@ CREATE TABLE user_history (
url VARCHAR(255) NOT NULL,
FOREIGN KEY (user_id)
REFERENCES guser(id)
) ENGINE=InnoDB DEFAULT CHARSET=latin1 COLLATE=latin1_general_ci;
) ENGINE=InnoDB;

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