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Fix connective tissue (#41)
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beckyjackson authored Dec 3, 2020
1 parent de92d8e commit 7c30162
Showing 4 changed files with 7 additions and 7 deletions.
6 changes: 3 additions & 3 deletions gecko.owl
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@@ -11,7 +11,7 @@
xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/gecko.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/gecko/releases/2020-11-27/gecko.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/gecko/releases/2020-12-03/gecko.owl"/>
<dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An ontology to represent genomics cohort attributes.</dc:description>
<dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Genomics Cohorts Knowledge Ontology</dc:title>
<terms:license rdf:resource="https://creativecommons.org/licenses/by/4.0/"/>
@@ -1488,11 +1488,11 @@ Written informed consent was obtained from the patient’s parents for publicati
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0003900">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0000001"/>
<obo:GECKO_9000000 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">diseases</obo:GECKO_9000000>
<obo:GECKO_9000001 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">connective tissue</obo:GECKO_9000001>
<obo:GECKO_9000001 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">connective tissue diseases</obo:GECKO_9000001>
<obo:IAO_0000115>A disease involving the connective tissue.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>connective tissue disease</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>connective tissue disease or disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>connective tissue diseases</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">connective tissue diseases</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>connective tissue disorder</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>connective tissue disorders</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>disease of connective tissue</oboInOwl:hasExactSynonym>
2 changes: 1 addition & 1 deletion src/ontology/templates/external.tsv
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@@ -18,7 +18,7 @@ cause of participant death cause of death information content entity other quest
clinical history information content entity
clinical measurement data item physiological measurements measurement datum questionnaire/survey data Replaces GECKO 'physiological measurements'
collection of organisms material entity
connective tissue disease connective tissue disease or disorder diseases
connective tissue disease connective tissue diseases disease or disorder diseases
consent textual entity consent/accessibility textual entity survey administration Replaces GECKO 'consent/accessibility'
copy number variation profiling assay Sequence variants (CNV, SNP arrays) genomic assay genomics Replaces GECKO 'Sequence variants (CNV, SNP arrays)'
count measurement datum
2 changes: 1 addition & 1 deletion views/ihcc-gecko.csv
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@@ -102,7 +102,7 @@ questionnaire/survey data,MONDO:0000001,diseases,A disease is a disposition to u
diseases,MONDO:0002051,skin and subcutaneous tissue diseases,A disease involving the integumental system.
diseases,MONDO:0002081,musculoskeletal system diseases,A disease involving the musculoskeletal system.
diseases,MONDO:0002118,urinary system diseases,A disease involving the renal system.
diseases,MONDO:0003900,connective tissue,A disease involving the connective tissue.
diseases,MONDO:0003900,connective tissue diseases,A disease involving the connective tissue.
diseases,MONDO:0004335,digestive system diseases,A disease or disorder that involves the digestive system.
diseases,MONDO:0004992,cancer,"A tumor composed of atypical neoplastic, often pleomorphic cells that invade other tissues. Malignant neoplasms often metastasize to distant anatomic sites and may recur after excision. The most common malignant neoplasms are carcinomas (adenocarcinomas or squamous cell carcinomas), Hodgkin and non-Hodgkin lymphomas, leukemias, melanomas, and sarcomas."
diseases,MONDO:0004995,cardiovascular diseases,A disease involving the cardiovascular system.
4 changes: 2 additions & 2 deletions views/ihcc-gecko.owl
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@@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/gecko/ihcc-gecko.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/gecko/releases/2020-11-27/views/ihcc-gecko.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/gecko/releases/2020-12-03/views/ihcc-gecko.owl"/>
</owl:Ontology>


@@ -1137,7 +1137,7 @@ Written informed consent was obtained from the patient’s parents for publicati
<oboInOwl:hasExactSynonym>primary disorder of connective tissue</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>tissue disease, connective</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>disorder of connective tissue</oboInOwl:hasRelatedSynonym>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">connective tissue</rdfs:label>
<rdfs:label>connective tissue diseases</rdfs:label>
</owl:Class>


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