openBF-db

The code in this repository can be used to generate physiological virtual population of vascular networks. The pulse wave propagation can be simulated with openBF solver. The network is based on ADAN56 model.

Requirements:

• Python + SALib + NumPy
• Julia +

Explore the virtual population here

How to

• First, the lower and upper bounds for each parameter should be defined. Fill parameters/*.txt with parameter ranges (min/max).
• Create SALib input files as

$ cd parameters
$ python write_ranges.py
$ cd ..

• SALib is used to sample input points via the Latin Hypercube method

$ python setup_simulations.py <N, number of samples>

This will generate a folder with as many input sub-folder as N.

• Simulations can be run as

$ julia run_simulations.jl 1 <N> <mesh-type, default=normal>

Alternatively, on SGE systems, use the batch script

$ qsub run_array.sh

• 🕐 Wait...