Inline creation of temporary molfile

IUPAC-InChI · Oct 16, 2024 · 478aa8d · 478aa8d
1 parent 236a36e
commit 478aa8d
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Showing 4 changed files with 5 additions and 25 deletions.
diff --git a/INCHI-1-TEST/tests/test_executable/conftest.py b/INCHI-1-TEST/tests/test_executable/conftest.py
@@ -48,15 +48,18 @@ def parse_aux_info_from_executable_output(output: str) -> str:
 
 @pytest.fixture
 def run_inchi_exe(request, tmp_path: Path) -> Callable:
-    def _run_inchi_exe(molfile_path: str, args: str = "") -> InchiResult:
+    def _run_inchi_exe(molfile: str, args: str = "") -> InchiResult:
 
         exe_path: str = request.config.getoption("--exe-path")
         if not Path(exe_path).exists():
             raise FileNotFoundError(f"InChI executable not found at {exe_path}.")
 
         output_path = tmp_path.joinpath("output.txt")
+        molfile_path = tmp_path.joinpath("tmp.mol")
+        molfile_path.write_text(molfile)
+
         result = subprocess.run(
-            [exe_path, molfile_path, str(output_path)] + args.split(),
+            [exe_path, str(molfile_path), str(output_path)] + args.split(),
             capture_output=True,
             text=True,
         )

diff --git a/INCHI-1-TEST/tests/test_executable/helpers.py b/INCHI-1-TEST/tests/test_executable/helpers.py
diff --git a/INCHI-1-TEST/tests/test_executable/test_github_40.py b/INCHI-1-TEST/tests/test_executable/test_github_40.py
@@ -1,9 +1,7 @@
 import pytest
-from helpers import tmp_molfile
 
 
 @pytest.fixture
-@tmp_molfile
 def molfile():
     return """(R)-SDP
   ChemDraw08122419562D

diff --git a/INCHI-1-TEST/tests/test_executable/test_github_52.py b/INCHI-1-TEST/tests/test_executable/test_github_52.py
@@ -1,9 +1,7 @@
 import pytest
-from helpers import tmp_molfile
 
 
 @pytest.fixture
-@tmp_molfile
 def molfile_empty_bondblock():
     return """
   -INDIGO-08292417452D
@@ -22,7 +20,6 @@ def molfile_empty_bondblock():
 
 
 @pytest.fixture
-@tmp_molfile
 def molfile_no_bondblock():
     return """
   -INDIGO-08292417452D